Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 IGHV3-41-201ENST00000613121 348 ntBASIC11.84□□□□□ -0.51
APOBP04114 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC11.84□□□□□ -0.51
APOBP04114 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
APOBP04114 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.51
APOBP04114 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 URGCP-206ENST00000446958 365 ntTSL 2 BASIC11.83□□□□□ -0.52
APOBP04114 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 AL139424.1-201ENST00000607572 797 ntBASIC11.83□□□□□ -0.52
APOBP04114 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.52
APOBP04114 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC11.83□□□□□ -0.52
APOBP04114 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
APOBP04114 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
APOBP04114 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
APOBP04114 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC11.83□□□□□ -0.52
APOBP04114 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
APOBP04114 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
APOBP04114 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 CD63-204ENST00000546939 779 ntTSL 3 BASIC11.83□□□□□ -0.52
APOBP04114 MIR5100-201ENST00000579544 119 ntBASIC11.83□□□□□ -0.52
APOBP04114 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC11.83□□□□□ -0.52
APOBP04114 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
APOBP04114 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
APOBP04114 AL391422.3-201ENST00000603791 2761 ntBASIC11.83□□□□□ -0.52
APOBP04114 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
APOBP04114 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC11.82□□□□□ -0.52
APOBP04114 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 MCCD1P1-208ENST00000445732 328 ntBASIC11.82□□□□□ -0.52
APOBP04114 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 AC009065.1-201ENST00000564055 1225 ntBASIC11.82□□□□□ -0.52
APOBP04114 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
APOBP04114 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
APOBP04114 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
APOBP04114 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC11.82□□□□□ -0.52
APOBP04114 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 AC034105.1-201ENST00000563488 319 ntBASIC11.82□□□□□ -0.52
APOBP04114 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 AC010240.3-201ENST00000607688 395 ntBASIC11.82□□□□□ -0.52
APOBP04114 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC11.82□□□□□ -0.52
APOBP04114 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC11.82□□□□□ -0.52
APOBP04114 KRT18P23-201ENST00000435622 1283 ntBASIC11.82□□□□□ -0.52
APOBP04114 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 HES2-202ENST00000377836 507 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 POM121L3P-201ENST00000419331 1163 ntBASIC11.82□□□□□ -0.52
APOBP04114 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC11.82□□□□□ -0.52
APOBP04114 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC11.82□□□□□ -0.52
APOBP04114 TERC-201ENST00000602385 541 ntBASIC11.82□□□□□ -0.52
APOBP04114 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
APOBP04114 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
APOBP04114 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC11.81□□□□□ -0.52
APOBP04114 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
APOBP04114 FAM197Y8-203ENST00000450145 560 ntBASIC11.81□□□□□ -0.52
APOBP04114 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC11.81□□□□□ -0.52
APOBP04114 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC11.81□□□□□ -0.52
APOBP04114 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms