Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC134043.2-201ENST00000624206 2238 ntBASIC14.28□□□□□ -0.12
HLA-DQA1P01909 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HLA-DQA1P01909 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DQA1P01909 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DQA1P01909 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DQA1P01909 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DQA1P01909 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DQA1P01909 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 RHOF-204ENST00000537265 699 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 AL031963.3-201ENST00000606441 850 ntBASIC14.27□□□□□ -0.13
HLA-DQA1P01909 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 AC012317.2-201ENST00000623305 2251 ntBASIC14.27□□□□□ -0.13
HLA-DQA1P01909 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DQA1P01909 PTBP1P-201ENST00000554374 1601 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 PHGDH-210ENST00000641115 1638 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MPST-204ENST00000404393 1329 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 AC084018.2-201ENST00000613093 2607 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 PCDHA12-202ENST00000613593 2588 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 IRS3P-201ENST00000223076 1006 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 AL354811.1-201ENST00000610286 706 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 MIR6084-201ENST00000622012 110 ntBASIC14.26□□□□□ -0.13
HLA-DQA1P01909 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DQA1P01909 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 KRT8P20-201ENST00000423953 1409 ntBASIC14.25□□□□□ -0.13
HLA-DQA1P01909 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HLA-DQA1P01909 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms