Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
TOP3BO95985 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.42■□□□□ 0.7
TOP3BO95985 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.42■□□□□ 0.7
TOP3BO95985 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TOP3BO95985 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TOP3BO95985 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TOP3BO95985 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.41■□□□□ 0.7
TOP3BO95985 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TOP3BO95985 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TOP3BO95985 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
TOP3BO95985 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TOP3BO95985 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 AC091076.1-201ENST00000610741 619 ntBASIC19.4■□□□□ 0.7
TOP3BO95985 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.4■□□□□ 0.7
TOP3BO95985 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TOP3BO95985 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
TOP3BO95985 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TOP3BO95985 TEX21P-204ENST00000641479 1693 ntBASIC19.4■□□□□ 0.7
TOP3BO95985 AC007613.1-201ENST00000572811 2597 ntBASIC19.39■□□□□ 0.7
TOP3BO95985 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TOP3BO95985 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TOP3BO95985 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TOP3BO95985 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.7
TOP3BO95985 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.39■□□□□ 0.7
TOP3BO95985 CROCCP3-202ENST00000420820 1947 ntBASIC19.39■□□□□ 0.7
TOP3BO95985 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TOP3BO95985 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.39■□□□□ 0.69
TOP3BO95985 LIN28AP1-201ENST00000429574 405 ntBASIC19.39■□□□□ 0.69
TOP3BO95985 AP002982.1-201ENST00000492365 877 ntBASIC19.39■□□□□ 0.69
TOP3BO95985 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.39■□□□□ 0.69
TOP3BO95985 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 AL121829.2-201ENST00000620908 328 ntBASIC19.39■□□□□ 0.69
TOP3BO95985 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.39■□□□□ 0.69
TOP3BO95985 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.39■□□□□ 0.69
TOP3BO95985 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.39■□□□□ 0.69
TOP3BO95985 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.39■□□□□ 0.69
TOP3BO95985 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TOP3BO95985 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TOP3BO95985 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TOP3BO95985 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.38■□□□□ 0.69
TOP3BO95985 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms