Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXA2O43364 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXA2O43364 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
HOXA2O43364 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXA2O43364 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.28■□□□□ 0.84
HOXA2O43364 HLA-F-220ENST00000434407 884 ntBASIC20.28■□□□□ 0.84
HOXA2O43364 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HOXA2O43364 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXA2O43364 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXA2O43364 AC092329.2-201ENST00000598402 547 ntBASIC20.28■□□□□ 0.84
HOXA2O43364 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXA2O43364 AC092119.3-201ENST00000612618 583 ntBASIC20.28■□□□□ 0.84
HOXA2O43364 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXA2O43364 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.28■□□□□ 0.84
HOXA2O43364 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.28■□□□□ 0.84
HOXA2O43364 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HOXA2O43364 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.28■□□□□ 0.84
HOXA2O43364 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HOXA2O43364 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXA2O43364 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
HOXA2O43364 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
HOXA2O43364 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HOXA2O43364 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXA2O43364 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXA2O43364 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.27■□□□□ 0.84
HOXA2O43364 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXA2O43364 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.27■□□□□ 0.84
HOXA2O43364 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.27■□□□□ 0.84
HOXA2O43364 MIR3652-201ENST00000579335 131 ntBASIC20.27■□□□□ 0.84
HOXA2O43364 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 AL136038.4-201ENST00000603606 1261 ntBASIC20.27■□□□□ 0.84
HOXA2O43364 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.27■□□□□ 0.84
HOXA2O43364 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.27■□□□□ 0.84
HOXA2O43364 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HOXA2O43364 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.27■□□□□ 0.83
HOXA2O43364 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.27■□□□□ 0.83
HOXA2O43364 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXA2O43364 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
HOXA2O43364 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 AC093525.10-201ENST00000625130 1569 ntBASIC20.26■□□□□ 0.83
HOXA2O43364 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXA2O43364 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HOXA2O43364 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXA2O43364 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 AL157888.1-201ENST00000631930 593 ntBASIC20.26■□□□□ 0.83
HOXA2O43364 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXA2O43364 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXA2O43364 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXA2O43364 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA2O43364 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA2O43364 AL162741.1-201ENST00000565563 1558 ntBASIC20.25■□□□□ 0.83
HOXA2O43364 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXA2O43364 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 KRT8P26-201ENST00000534154 1276 ntBASIC20.25■□□□□ 0.83
HOXA2O43364 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.25■□□□□ 0.83
HOXA2O43364 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA2O43364 RCC2P3-201ENST00000418112 1537 ntBASIC20.25■□□□□ 0.83
HOXA2O43364 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXA2O43364 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HOXA2O43364 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 HOXB1-202ENST00000577092 1414 ntBASIC20.25■□□□□ 0.83
HOXA2O43364 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXA2O43364 AL512353.2-201ENST00000448759 1962 ntBASIC20.25■□□□□ 0.83
HOXA2O43364 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.24■□□□□ 0.83
HOXA2O43364 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HOXA2O43364 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 AC016734.2-201ENST00000624325 1377 ntBASIC20.24■□□□□ 0.83
HOXA2O43364 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
HOXA2O43364 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HOXA2O43364 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
HOXA2O43364 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXA2O43364 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms