Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 HCG11-201ENST00000411553 5696 ntBASIC23.87■■□□□ 1.41
NPHP1O15259 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
NPHP1O15259 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.86■■□□□ 1.41
NPHP1O15259 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
NPHP1O15259 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC23.86■■□□□ 1.41
NPHP1O15259 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.86■■□□□ 1.41
NPHP1O15259 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP1O15259 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.86■■□□□ 1.41
NPHP1O15259 AC024243.1-201ENST00000609234 778 ntBASIC23.86■■□□□ 1.41
NPHP1O15259 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.86■■□□□ 1.41
NPHP1O15259 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP1O15259 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
NPHP1O15259 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP1O15259 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC23.86■■□□□ 1.41
NPHP1O15259 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP1O15259 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
NPHP1O15259 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP1O15259 ILF2-202ENST00000368681 726 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP1O15259 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC23.85■■□□□ 1.41
NPHP1O15259 SPDYE13P-201ENST00000445314 798 ntBASIC23.85■■□□□ 1.41
NPHP1O15259 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC23.85■■□□□ 1.41
NPHP1O15259 BX276092.5-203ENST00000456199 560 ntBASIC23.85■■□□□ 1.41
NPHP1O15259 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.85■■□□□ 1.41
NPHP1O15259 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC23.85■■□□□ 1.41
NPHP1O15259 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 SDHD-206ENST00000528182 754 ntTSL 3 BASIC23.85■■□□□ 1.41
NPHP1O15259 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
NPHP1O15259 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
NPHP1O15259 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.85■■□□□ 1.41
NPHP1O15259 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
NPHP1O15259 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
NPHP1O15259 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
NPHP1O15259 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP1O15259 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.84■■□□□ 1.41
NPHP1O15259 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.84■■□□□ 1.41
NPHP1O15259 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC23.84■■□□□ 1.41
NPHP1O15259 NPAP1P7-201ENST00000613027 823 ntBASIC23.84■■□□□ 1.41
NPHP1O15259 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.84■■□□□ 1.41
NPHP1O15259 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC23.84■■□□□ 1.41
NPHP1O15259 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.84■■□□□ 1.41
NPHP1O15259 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
NPHP1O15259 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
NPHP1O15259 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.83■■□□□ 1.41
NPHP1O15259 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 TSPY21P-201ENST00000433481 731 ntBASIC23.83■■□□□ 1.41
NPHP1O15259 TSPY23P-201ENST00000440136 739 ntBASIC23.83■■□□□ 1.41
NPHP1O15259 TSSC2-201ENST00000450217 709 ntBASIC23.83■■□□□ 1.41
NPHP1O15259 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC23.83■■□□□ 1.41
NPHP1O15259 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.83■■□□□ 1.41
NPHP1O15259 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.83■■□□□ 1.41
NPHP1O15259 AL121672.3-201ENST00000608644 468 ntBASIC23.83■■□□□ 1.41
NPHP1O15259 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.83■■□□□ 1.41
NPHP1O15259 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
NPHP1O15259 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
NPHP1O15259 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP1O15259 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.83■■□□□ 1.4
NPHP1O15259 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC23.83■■□□□ 1.4
NPHP1O15259 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC23.83■■□□□ 1.4
NPHP1O15259 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP1O15259 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC23.82■■□□□ 1.4
NPHP1O15259 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.82■■□□□ 1.4
NPHP1O15259 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP1O15259 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP1O15259 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP1O15259 AC011498.5-201ENST00000592027 486 ntBASIC23.82■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms