Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 MAPK10-349ENST00000641767 3661 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
GFRA3O60609 U3.8-201ENST00000363675 217 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 RNA5SP130-201ENST00000364431 114 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 RNA5SP187-201ENST00000384400 119 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 SDHCP2-201ENST00000398565 501 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC4.47□□□□□ -1.69
GFRA3O60609 RPL23AP46-201ENST00000438548 490 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 ENPP7P11-201ENST00000505915 627 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 RNU7-149P-201ENST00000516739 59 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC4.47□□□□□ -1.69
GFRA3O60609 MIR3163-201ENST00000581592 73 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 MIR6839-201ENST00000620425 113 ntBASIC4.47□□□□□ -1.69
GFRA3O60609 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
GFRA3O60609 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.47□□□□□ -1.69
GFRA3O60609 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.47□□□□□ -1.69
GFRA3O60609 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
GFRA3O60609 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
GFRA3O60609 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.47□□□□□ -1.69
GFRA3O60609 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.47□□□□□ -1.69
GFRA3O60609 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
GFRA3O60609 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
GFRA3O60609 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.46□□□□□ -1.7
GFRA3O60609 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
GFRA3O60609 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.46□□□□□ -1.7
GFRA3O60609 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 RNU6-944P-201ENST00000364023 107 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 RNU1-100P-201ENST00000365255 165 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 RNU6-438P-201ENST00000365561 103 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 MIR548B-201ENST00000385247 97 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 MIR873-201ENST00000401120 77 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.46□□□□□ -1.7
GFRA3O60609 KC877373.1-201ENST00000479066 408 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 IFITM8P-201ENST00000522529 394 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 TRAV8-5-201ENST00000537369 341 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 AC022523.2-201ENST00000561045 150 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 AL162713.1-201ENST00000604480 262 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 AL121772.2-201ENST00000614331 297 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 AC018692.3-201ENST00000623929 123 ntBASIC4.46□□□□□ -1.7
GFRA3O60609 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
GFRA3O60609 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.46□□□□□ -1.7
GFRA3O60609 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
GFRA3O60609 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
GFRA3O60609 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
GFRA3O60609 AP005435.3-201ENST00000531260 3198 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
GFRA3O60609 RNU1-83P-201ENST00000363426 164 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 RNA5SP72-201ENST00000364442 117 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 Y_RNA.500-201ENST00000384466 111 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AL355796.1-201ENST00000406706 323 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 RN7SKP156-201ENST00000410308 342 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 Z98742.3-201ENST00000418637 326 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 SNRPEP9-201ENST00000436794 238 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AC113410.1-201ENST00000505029 247 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AC093259.1-201ENST00000509755 300 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 RNU6-126P-201ENST00000516685 103 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 snoU109.6-201ENST00000516831 118 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC4.45□□□□□ -1.7
GFRA3O60609 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.45□□□□□ -1.7
GFRA3O60609 MIR4662B-201ENST00000579498 81 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AL929325.1-201ENST00000603096 117 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 AL606490.9-201ENST00000603331 271 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 uc_338.13-201ENST00000618243 179 ntBASIC4.45□□□□□ -1.7
GFRA3O60609 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
GFRA3O60609 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.45□□□□□ -1.7
GFRA3O60609 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
GFRA3O60609 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.44□□□□□ -1.7
GFRA3O60609 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
GFRA3O60609 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
GFRA3O60609 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
GFRA3O60609 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
GFRA3O60609 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
GFRA3O60609 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.44□□□□□ -1.7
GFRA3O60609 MIR562-201ENST00000384894 95 ntBASIC4.44□□□□□ -1.7
GFRA3O60609 MIR1250-201ENST00000408098 113 ntBASIC4.44□□□□□ -1.7
GFRA3O60609 RNU6-887P-201ENST00000410660 100 ntBASIC4.44□□□□□ -1.7
GFRA3O60609 AL121890.1-201ENST00000435457 205 ntBASIC4.44□□□□□ -1.7
GFRA3O60609 RPL23AP52-201ENST00000439311 478 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms