Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.82□□□□□ -1.64
COL9A1P20849 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.82□□□□□ -1.64
COL9A1P20849 AL137067.1-201ENST00000615933 120 ntBASIC4.82□□□□□ -1.64
COL9A1P20849 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.82□□□□□ -1.64
COL9A1P20849 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.82□□□□□ -1.64
COL9A1P20849 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL9A1P20849 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL9A1P20849 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL9A1P20849 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL9A1P20849 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL9A1P20849 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.82□□□□□ -1.64
COL9A1P20849 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL9A1P20849 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL9A1P20849 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL9A1P20849 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.81□□□□□ -1.64
COL9A1P20849 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 RNY4P6-201ENST00000363667 96 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 RNU6-1210P-201ENST00000363775 107 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 U3.15-201ENST00000365398 212 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 MIR590-201ENST00000385008 97 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 AC002075.2-201ENST00000425207 252 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 HMGN2P9-201ENST00000476875 229 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 RN7SL558P-201ENST00000497468 299 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.81□□□□□ -1.64
COL9A1P20849 SNORA74C-1-201ENST00000580726 201 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 AC012493.2-201ENST00000595083 291 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 MALAT1.1-201ENST00000618249 95 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 5S_rRNA.13-201ENST00000622298 123 ntBASIC4.81□□□□□ -1.64
COL9A1P20849 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
COL9A1P20849 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.81□□□□□ -1.64
COL9A1P20849 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.81□□□□□ -1.64
COL9A1P20849 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL9A1P20849 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.81□□□□□ -1.64
COL9A1P20849 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL9A1P20849 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL9A1P20849 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL9A1P20849 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 AL121839.2-201ENST00000565058 6943 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 AC103988.1-201ENST00000566382 2177 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 Y_RNA.203-201ENST00000364106 102 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 RPL27AP5-201ENST00000469428 449 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 RNA5SP20-201ENST00000515976 84 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 RNU6-709P-201ENST00000517257 104 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 AC007751.1-201ENST00000529260 376 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.8□□□□□ -1.64
COL9A1P20849 AC015720.1-201ENST00000565251 277 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 Pinc.1-201ENST00000616452 154 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL9A1P20849 AC104260.2-201ENST00000623551 3497 ntBASIC4.8□□□□□ -1.64
COL9A1P20849 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.8□□□□□ -1.64
COL9A1P20849 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL9A1P20849 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.8□□□□□ -1.64
COL9A1P20849 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
COL9A1P20849 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
COL9A1P20849 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC4.79□□□□□ -1.64
COL9A1P20849 AC004656.1-201ENST00000568479 4951 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 RNU6-1292P-201ENST00000383856 107 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 SNORD11-201ENST00000459124 84 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 SNORD65B-201ENST00000459126 73 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 AC010531.2-201ENST00000465012 153 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 AC078817.1-201ENST00000492623 435 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 OR9P1P-201ENST00000496431 281 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 RNU1-6P-201ENST00000516290 144 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 RNU6-109P-201ENST00000516364 107 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 RNU6-184P-201ENST00000516514 107 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 AC107934.2-201ENST00000518653 310 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 MIR6867-201ENST00000610636 67 ntBASIC4.79□□□□□ -1.64
COL9A1P20849 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.79□□□□□ -1.64
COL9A1P20849 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL9A1P20849 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL9A1P20849 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms