Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 U4.7-201ENST00000638126 106 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 LINC02555-201ENST00000563933 1951 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 snoU2_19.2-201ENST00000363024 80 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.123-201ENST00000363338 102 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.352-201ENST00000365439 102 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 RNA5SP167-201ENST00000365461 116 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-741P-201ENST00000383889 107 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.555-201ENST00000384673 110 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 MIR607-201ENST00000385241 96 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 RNU2-68P-201ENST00000410878 191 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AC022018.1-201ENST00000430685 241 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 PIGFP3-201ENST00000441918 722 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 snoU13.4-201ENST00000458916 104 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 KC877373.1-201ENST00000479066 408 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AP002770.2-201ENST00000543613 532 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 SYF2P1-201ENST00000550658 413 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 RPL12P50-201ENST00000603116 116 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AC010900.2-201ENST00000604508 210 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 MIR622-201ENST00000638396 96 ntBASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USHBP1Q8N6Y0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 SNORD81.1-201ENST00000363064 77 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 RNY3P4-201ENST00000384428 101 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AL591043.1-201ENST00000432461 424 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AL139109.1-201ENST00000455491 297 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 PRELID3BP1-201ENST00000457142 540 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 snoU109.2-201ENST00000459316 135 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AC117440.1-201ENST00000474107 571 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 RPL31P13-201ENST00000484151 370 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 SCARNA20.6-201ENST00000517251 106 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 DEFB108E-201ENST00000524692 240 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AC010186.2-204ENST00000537668 439 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 RPL23AP78-201ENST00000599928 470 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 MIR376A1-201ENST00000616574 68 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AC137590.2-201ENST00000619709 240 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 USP8P1-201ENST00000494673 3183 ntBASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.06□□□□□ -1.76
USHBP1Q8N6Y0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AC073325.2-201ENST00000339545 159 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 MIR423-201ENST00000362201 94 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.29-201ENST00000362570 113 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 SNORA31-201ENST00000362607 130 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 RNA5SP189-201ENST00000364920 115 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AP002088.1-201ENST00000382740 395 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 SNORA18.3-201ENST00000384122 132 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 MIR3074-201ENST00000384885 81 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 SNORD58.1-201ENST00000391313 66 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 SNORA48.8-201ENST00000391324 134 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 BTF3L4P2-201ENST00000392798 346 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AL603910.2-201ENST00000407268 136 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 RNU2-14P-201ENST00000411053 191 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 TMEM167AP1-201ENST00000423409 219 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 RPS23P5-201ENST00000495419 428 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 RN7SKP272-201ENST00000516988 232 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 CASP1P1-201ENST00000526345 212 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 TGIF1P1-201ENST00000558095 802 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 CYCSP39-201ENST00000565821 309 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AC130289.1-201ENST00000577321 73 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 B3GNTL1P2-201ENST00000603673 288 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.772-201ENST00000606692 102 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AC027309.3-201ENST00000623419 351 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 U6.92-201ENST00000636464 89 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AL450472.1-202ENST00000637286 180 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 AC000403.1-201ENST00000613696 3585 ntBASIC4.05□□□□□ -1.76
USHBP1Q8N6Y0 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 MIR449A-201ENST00000362113 91 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.65-201ENST00000362846 100 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RNY1-201ENST00000364228 113 ntBASIC4.04□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-336P-201ENST00000364891 107 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms