Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 Y_RNA.690-201ENST00000516603 95 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AC018630.3-201ENST00000542637 96 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 RPL30P11-203ENST00000598995 310 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 SNX18P1Y-201ENST00000616231 511 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 AC099669.2-201ENST00000616549 437 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 MIR6891-201ENST00000618788 93 ntBASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NPAS3Q8IXF0 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 RNU6-166P-201ENST00000384371 107 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 FTH1P6-201ENST00000430768 320 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC245047.4-201ENST00000433189 144 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC112220.1-201ENST00000434628 355 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 RPL23AP52-201ENST00000439311 478 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 RPL21P129-201ENST00000491732 478 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 RN7SKP277-201ENST00000516895 283 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC025647.1-201ENST00000517879 253 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 SNORA43.4-201ENST00000629559 138 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC140479.6-201ENST00000633535 357 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 AC006971.1-201ENST00000407916 4486 ntBASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NPAS3Q8IXF0 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 SPRR2C-201ENST00000290702 219 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 MIR367-201ENST00000362299 68 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 Y_RNA.85-201ENST00000363014 111 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RNU6-309P-201ENST00000364573 106 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RNA5SP125-201ENST00000364843 120 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 SNORA36A-201ENST00000384221 132 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 Y_RNA.549-201ENST00000384657 102 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 MIRLET7F2-201ENST00000385277 83 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 SNORA40C-201ENST00000391285 128 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 SNORA11F-201ENST00000408237 128 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RNU6-383P-201ENST00000410864 94 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC096649.2-201ENST00000416186 393 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC243964.1-201ENST00000441814 261 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC012671.1-201ENST00000451912 203 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC010469.1-201ENST00000463864 576 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC010531.2-201ENST00000465012 153 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AL049874.1-201ENST00000489560 388 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RFPL4AP5-201ENST00000514977 504 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RNU6-572P-201ENST00000516724 80 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC034105.4-201ENST00000568304 277 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 MIR4724-201ENST00000579485 89 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 MIR378D2-201ENST00000580636 98 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC007390.2-201ENST00000606229 3803 ntBASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
NPAS3Q8IXF0 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 SNORD18B-201ENST00000365659 72 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 MIR23B-201ENST00000384832 97 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 MIR3065-201ENST00000390137 79 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 PPIAP31-201ENST00000405422 495 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AL135786.1-201ENST00000415892 214 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 RPL31P13-201ENST00000484151 370 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC093331.1-201ENST00000521474 169 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC107016.1-201ENST00000550463 337 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC007012.1-201ENST00000567192 175 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC015912.2-201ENST00000571053 181 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC079587.1-201ENST00000603846 277 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 MIR8059-201ENST00000620427 81 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 AC080128.1-201ENST00000474389 1917 ntBASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NPAS3Q8IXF0 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.59□□□□□ -1.67
NPAS3Q8IXF0 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
NPAS3Q8IXF0 AC126323.6-202ENST00000568092 3511 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms