Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.32□□□□□ -1.72
RNFT1Q5M7Z0 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
RNFT1Q5M7Z0 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
RNFT1Q5M7Z0 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
RNFT1Q5M7Z0 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
RNFT1Q5M7Z0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AC073136.1-201ENST00000449426 2884 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 SNORD56.1-201ENST00000362913 68 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 Y_RNA.243-201ENST00000364481 109 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 SNORA70E-201ENST00000384492 135 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 Y_RNA.544-201ENST00000384650 113 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 MIR518D-201ENST00000385014 87 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AL590762.2-201ENST00000395798 571 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 RPEP3-201ENST00000425462 676 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AC007919.1-201ENST00000429380 217 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 HMGB1P37-201ENST00000439613 609 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 RPL39P40-201ENST00000445481 146 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 RPL23AP14-201ENST00000468281 468 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 RNU6ATAC17P-201ENST00000516074 71 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 LINC00933-203ENST00000559812 219 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AC105129.1-201ENST00000560250 297 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AL031274.2-201ENST00000599419 203 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AC134878.1-201ENST00000619901 243 ntBASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
RNFT1Q5M7Z0 AL133383.2-201ENST00000622958 2336 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AC139713.2-214ENST00000642059 1811 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 SNORA62-201ENST00000365493 153 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 Z98749.2-208ENST00000381646 500 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 RNU6-1113P-201ENST00000384348 107 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 SNORA51.10-201ENST00000384418 136 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 MIR544A-201ENST00000384855 91 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 Y_RNA.622-201ENST00000411091 108 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AL451050.1-201ENST00000450126 415 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 SNRPGP8-201ENST00000454064 226 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 RN7SKP43-201ENST00000516173 320 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 RNU1-6P-201ENST00000516290 144 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 RNU6-703P-201ENST00000516946 107 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 PRELID2P1-201ENST00000552837 301 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 CYP4A27P-201ENST00000567218 190 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 MIR3921-201ENST00000577308 85 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AC025946.2-201ENST00000603398 234 ntBASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
RNFT1Q5M7Z0 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 Y_RNA.220-201ENST00000364244 109 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 Y_RNA.361-201ENST00000365515 120 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 MIR129-1-201ENST00000384972 72 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 SNORA48.5-201ENST00000391143 135 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 RNU6-383P-201ENST00000410864 94 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 AL732292.1-201ENST00000426692 226 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 AC244670.1-201ENST00000436879 112 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 RNU6-197P-201ENST00000516680 100 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 RNU6-1183P-201ENST00000517054 60 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 AC025647.1-201ENST00000517879 253 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 MIR4284-201ENST00000578924 81 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 ARF4P1-201ENST00000605447 541 ntBASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.29□□□□□ -1.72
RNFT1Q5M7Z0 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 LINC01355-201ENST00000566551 5444 ntBASIC4.28□□□□□ -1.72
RNFT1Q5M7Z0 SNORD12C-201ENST00000386307 89 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms