Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 RASA4DP-201ENST00000460726 1199 ntBASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 BMF-207ENST00000559701 630 ntTSL 3 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC36.09■■■■□ 3.37
SHROOM4Q9ULL8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC36.08■■■■□ 3.37
SHROOM4Q9ULL8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 CHCHD2P8-201ENST00000429873 447 ntBASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 AP002414.4-201ENST00000589764 1148 ntBASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 AC117500.6-201ENST00000624871 588 ntBASIC36.07■■■■□ 3.37
SHROOM4Q9ULL8 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC36.07■■■■□ 3.36
SHROOM4Q9ULL8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 AC034232.1-201ENST00000506026 1064 ntBASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 AC011498.5-201ENST00000592027 486 ntBASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC36.06■■■■□ 3.36
SHROOM4Q9ULL8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 TPSP2-201ENST00000561760 610 ntBASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 AC125437.2-201ENST00000625180 2167 ntBASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 PMS2P1-201ENST00000431037 1228 ntBASIC36.05■■■■□ 3.36
SHROOM4Q9ULL8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 DRAXINP1-201ENST00000437611 948 ntBASIC36.04■■■■□ 3.36
SHROOM4Q9ULL8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC36.03■■■■□ 3.36
SHROOM4Q9ULL8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 KRT8P26-201ENST00000534154 1276 ntBASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
SHROOM4Q9ULL8 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC36.02■■■■□ 3.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms