Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.84■□□□□ 0.61
TRIM39Q9HCM9 AL032819.2-201ENST00000624543 2162 ntBASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TRIM39Q9HCM9 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.83■□□□□ 0.6
TRIM39Q9HCM9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AIRN-201ENST00000601203 4374 ntBASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 CCR12P-201ENST00000446203 998 ntBASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AC128688.1-201ENST00000487626 519 ntBASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TRIM39Q9HCM9 AC141586.3-201ENST00000562166 1838 ntBASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 KRT18P22-201ENST00000402024 1347 ntBASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 AC116562.4-202ENST00000641738 218 ntBASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRIM39Q9HCM9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms