Protein–RNA interactions for Protein: Q9H094

NBPF3, Neuroblastoma breakpoint family member 3, humanhuman

Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NBPF3Q9H094 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
NBPF3Q9H094 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NBPF3Q9H094 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NBPF3Q9H094 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.55■■□□□ 1.2
NBPF3Q9H094 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 AL023803.3-201ENST00000615559 522 ntBASIC22.55■■□□□ 1.2
NBPF3Q9H094 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NBPF3Q9H094 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC22.55■■□□□ 1.2
NBPF3Q9H094 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.54■■□□□ 1.2
NBPF3Q9H094 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
NBPF3Q9H094 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 UPK3BP1-201ENST00000428678 509 ntBASIC22.53■■□□□ 1.2
NBPF3Q9H094 LIN28AP1-201ENST00000429574 405 ntBASIC22.53■■□□□ 1.2
NBPF3Q9H094 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC22.53■■□□□ 1.2
NBPF3Q9H094 AC008622.2-201ENST00000617006 1229 ntBASIC22.53■■□□□ 1.2
NBPF3Q9H094 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
NBPF3Q9H094 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 AC010203.1-204ENST00000548782 407 ntBASIC22.52■■□□□ 1.2
NBPF3Q9H094 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC22.52■■□□□ 1.2
NBPF3Q9H094 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
NBPF3Q9H094 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
NBPF3Q9H094 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.19
NBPF3Q9H094 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 TSPY14P-201ENST00000303979 915 ntBASIC22.51■■□□□ 1.19
NBPF3Q9H094 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC22.51■■□□□ 1.19
NBPF3Q9H094 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC22.51■■□□□ 1.19
NBPF3Q9H094 AC091076.1-201ENST00000610741 619 ntBASIC22.51■■□□□ 1.19
NBPF3Q9H094 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC22.51■■□□□ 1.19
NBPF3Q9H094 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC22.51■■□□□ 1.19
NBPF3Q9H094 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
NBPF3Q9H094 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NBPF3Q9H094 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
NBPF3Q9H094 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NBPF3Q9H094 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NBPF3Q9H094 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms