Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
ABCA3Q99758 KRT18P58-201ENST00000527480 1120 ntBASIC25.33■■□□□ 1.65
ABCA3Q99758 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC25.33■■□□□ 1.65
ABCA3Q99758 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
ABCA3Q99758 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ABCA3Q99758 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
ABCA3Q99758 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.64
ABCA3Q99758 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 TLE1-202ENST00000376484 666 ntTSL 3 BASIC25.32■■□□□ 1.64
ABCA3Q99758 KRT18P67-201ENST00000432816 1264 ntBASIC25.32■■□□□ 1.64
ABCA3Q99758 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
ABCA3Q99758 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC25.32■■□□□ 1.64
ABCA3Q99758 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
ABCA3Q99758 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 EMD-201ENST00000369835 966 ntTSL 3 BASIC25.32■■□□□ 1.64
ABCA3Q99758 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
ABCA3Q99758 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC25.32■■□□□ 1.64
ABCA3Q99758 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC25.32■■□□□ 1.64
ABCA3Q99758 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
ABCA3Q99758 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
ABCA3Q99758 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC25.31■■□□□ 1.64
ABCA3Q99758 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
ABCA3Q99758 AC073314.1-201ENST00000568729 2216 ntBASIC25.31■■□□□ 1.64
ABCA3Q99758 MIR1233-2-201ENST00000408138 82 ntBASIC25.31■■□□□ 1.64
ABCA3Q99758 MIR1233-1-201ENST00000408722 82 ntBASIC25.31■■□□□ 1.64
ABCA3Q99758 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC25.31■■□□□ 1.64
ABCA3Q99758 BNIP3P18-201ENST00000593976 575 ntBASIC25.31■■□□□ 1.64
ABCA3Q99758 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
ABCA3Q99758 AC148477.8-201ENST00000624298 468 ntBASIC25.31■■□□□ 1.64
ABCA3Q99758 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
ABCA3Q99758 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 AL512408.1-201ENST00000569378 2000 ntBASIC25.3■■□□□ 1.64
ABCA3Q99758 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC25.3■■□□□ 1.64
ABCA3Q99758 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC25.3■■□□□ 1.64
ABCA3Q99758 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
ABCA3Q99758 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
ABCA3Q99758 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC25.29■■□□□ 1.64
ABCA3Q99758 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC25.29■■□□□ 1.64
ABCA3Q99758 AP003733.1-201ENST00000491725 852 ntBASIC25.29■■□□□ 1.64
ABCA3Q99758 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC25.29■■□□□ 1.64
ABCA3Q99758 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC25.29■■□□□ 1.64
ABCA3Q99758 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC25.29■■□□□ 1.64
ABCA3Q99758 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC25.29■■□□□ 1.64
ABCA3Q99758 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC25.29■■□□□ 1.64
ABCA3Q99758 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
ABCA3Q99758 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC25.29■■□□□ 1.64
ABCA3Q99758 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC25.29■■□□□ 1.64
ABCA3Q99758 AC092865.5-201ENST00000545435 363 ntBASIC25.29■■□□□ 1.64
ABCA3Q99758 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC25.29■■□□□ 1.64
ABCA3Q99758 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC25.29■■□□□ 1.64
ABCA3Q99758 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
ABCA3Q99758 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC25.28■■□□□ 1.64
ABCA3Q99758 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
ABCA3Q99758 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms