Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.25□□□□□ -0.13
LINC00477Q96M19 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
LINC00477Q96M19 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 POM121L13P-201ENST00000422362 380 ntBASIC14.24□□□□□ -0.13
LINC00477Q96M19 AC069152.1-201ENST00000438030 544 ntBASIC14.24□□□□□ -0.13
LINC00477Q96M19 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 AL160286.2-201ENST00000567150 934 ntBASIC14.24□□□□□ -0.13
LINC00477Q96M19 AC004264.1-201ENST00000608354 794 ntBASIC14.24□□□□□ -0.13
LINC00477Q96M19 INO80E-214ENST00000620599 515 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LINC00477Q96M19 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.24□□□□□ -0.13
LINC00477Q96M19 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 AC083906.6-201ENST00000641366 219 ntBASIC14.23□□□□□ -0.13
LINC00477Q96M19 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 AL512353.2-201ENST00000448759 1962 ntBASIC14.23□□□□□ -0.13
LINC00477Q96M19 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 AC090164.3-201ENST00000610780 2143 ntBASIC14.23□□□□□ -0.13
LINC00477Q96M19 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LINC00477Q96M19 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LINC00477Q96M19 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms