Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 AF106564.1-201ENST00000607058 2553 ntBASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 AC010327.4-202ENST00000591484 748 ntBASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 IGHV3-41-201ENST00000613121 348 ntBASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 AC005104.2-201ENST00000427818 678 ntBASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.81□□□□□ -0.36
ALMS1Q8TCU4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 AP005212.1-201ENST00000581547 1997 ntBASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 AL591684.3-201ENST00000605187 298 ntBASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
ALMS1Q8TCU4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 LBH-204ENST00000406087 559 ntTSL 4 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AC027601.4-201ENST00000611259 610 ntBASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AC098831.1-202ENST00000438821 336 ntBASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 PMS2P7-201ENST00000506558 1336 ntBASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
ALMS1Q8TCU4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC12.78□□□□□ -0.36
ALMS1Q8TCU4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
ALMS1Q8TCU4 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
ALMS1Q8TCU4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms