Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AL022342.1-201ENST00000400363 863 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 DRAXINP1-201ENST00000437611 948 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AP000867.3-201ENST00000524675 377 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 TPSP2-201ENST00000561760 610 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 MIR3180-5-201ENST00000583743 153 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AC006538.3-201ENST00000612495 578 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AC023511.2-201ENST00000618803 211 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AL391807.1-203ENST00000604392 2365 ntBASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SLC44A3Q8N4M1 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC079781.3-201ENST00000449110 356 ntBASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 LINC01711-201ENST00000598340 967 ntBASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AL136038.4-201ENST00000603606 1261 ntBASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC004263.2-201ENST00000617183 678 ntBASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SLC44A3Q8N4M1 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 LINC00265-3P-201ENST00000447588 903 ntBASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SLC44A3Q8N4M1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 MCCD1P1-208ENST00000445732 328 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 KRT18P31-201ENST00000506277 1292 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 FOSL1P1-201ENST00000511041 816 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 RNF126P1-202ENST00000569893 925 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 MIR3917-201ENST00000580971 93 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 AC112497.1-201ENST00000624824 639 ntBASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SLC44A3Q8N4M1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms