Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 AC120498.9-201ENST00000339021 3867 ntBASIC15.67■□□□□ 0.1
CSPG4Q6UVK1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 RNF126P1-202ENST00000569893 925 ntBASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 TSPY22P-201ENST00000427496 604 ntBASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AP000867.3-201ENST00000524675 377 ntBASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 AC091304.2-201ENST00000564639 760 ntBASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
CSPG4Q6UVK1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 SEC1P-202ENST00000473944 940 ntBASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.65■□□□□ 0.1
CSPG4Q6UVK1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.1
CSPG4Q6UVK1 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 AF228730.7-201ENST00000641842 219 ntBASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CSPG4Q6UVK1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 TPSP2-201ENST00000561760 610 ntBASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.63■□□□□ 0.09
CSPG4Q6UVK1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms