Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 VENTXP5-201ENST00000523979 775 ntBASIC20.2■□□□□ 0.82
USP41Q3LFD5 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP41Q3LFD5 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.2■□□□□ 0.82
USP41Q3LFD5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 KRT18P56-201ENST00000507275 550 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 ZNF444P1-201ENST00000559497 298 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 AC083849.1-201ENST00000615227 514 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 HYMAI.1-201ENST00000620949 238 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.19■□□□□ 0.82
USP41Q3LFD5 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 GPAT2P1-201ENST00000444924 1672 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP41Q3LFD5 LINC01311-201ENST00000565162 1445 ntBASIC20.19■□□□□ 0.82
USP41Q3LFD5 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 AC093458.2-201ENST00000623150 629 ntBASIC20.18■□□□□ 0.82
USP41Q3LFD5 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP41Q3LFD5 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USP41Q3LFD5 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 SPDYE15P-201ENST00000424157 909 ntBASIC20.17■□□□□ 0.82
USP41Q3LFD5 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP41Q3LFD5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
USP41Q3LFD5 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 AL023284.2-201ENST00000405850 579 ntBASIC20.16■□□□□ 0.82
USP41Q3LFD5 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC20.16■□□□□ 0.82
USP41Q3LFD5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP41Q3LFD5 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms