Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NEK3P51956 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
NEK3P51956 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NEK3P51956 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NEK3P51956 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
NEK3P51956 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NEK3P51956 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.59■□□□□ 0.73
NEK3P51956 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
NEK3P51956 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NEK3P51956 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
NEK3P51956 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 LINC01023-201ENST00000606054 436 ntBASIC19.58■□□□□ 0.72
NEK3P51956 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.58■□□□□ 0.72
NEK3P51956 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.58■□□□□ 0.72
NEK3P51956 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.58■□□□□ 0.72
NEK3P51956 HLA-A-209ENST00000638375 975 ntBASIC19.58■□□□□ 0.72
NEK3P51956 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.58■□□□□ 0.72
NEK3P51956 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.58■□□□□ 0.72
NEK3P51956 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.58■□□□□ 0.72
NEK3P51956 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.58■□□□□ 0.72
NEK3P51956 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.58■□□□□ 0.72
NEK3P51956 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.58■□□□□ 0.72
NEK3P51956 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NEK3P51956 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 FSCN1P1-201ENST00000568912 1481 ntBASIC19.57■□□□□ 0.72
NEK3P51956 MMP23A-201ENST00000234610 1017 ntBASIC19.57■□□□□ 0.72
NEK3P51956 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 ECEL1P3-201ENST00000427961 737 ntBASIC19.57■□□□□ 0.72
NEK3P51956 AC004980.1-204ENST00000429707 299 ntBASIC19.57■□□□□ 0.72
NEK3P51956 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.57■□□□□ 0.72
NEK3P51956 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.57■□□□□ 0.72
NEK3P51956 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.57■□□□□ 0.72
NEK3P51956 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.57■□□□□ 0.72
NEK3P51956 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.57■□□□□ 0.72
NEK3P51956 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
NEK3P51956 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
NEK3P51956 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NEK3P51956 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.57■□□□□ 0.72
NEK3P51956 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.56■□□□□ 0.72
NEK3P51956 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
NEK3P51956 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.56■□□□□ 0.72
NEK3P51956 AP000525.1-201ENST00000608286 694 ntBASIC19.56■□□□□ 0.72
NEK3P51956 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.56■□□□□ 0.72
NEK3P51956 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.56■□□□□ 0.72
NEK3P51956 AC133561.5-201ENST00000635547 218 ntBASIC19.56■□□□□ 0.72
NEK3P51956 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.56■□□□□ 0.72
NEK3P51956 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NEK3P51956 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
NEK3P51956 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.56■□□□□ 0.72
NEK3P51956 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
NEK3P51956 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NEK3P51956 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NEK3P51956 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NEK3P51956 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.55■□□□□ 0.72
NEK3P51956 AC079598.2-202ENST00000546624 1451 ntBASIC19.55■□□□□ 0.72
NEK3P51956 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NEK3P51956 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NEK3P51956 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.55■□□□□ 0.72
NEK3P51956 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.55■□□□□ 0.72
NEK3P51956 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
NEK3P51956 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.55■□□□□ 0.72
NEK3P51956 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.55■□□□□ 0.72
NEK3P51956 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.55■□□□□ 0.72
NEK3P51956 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.55■□□□□ 0.72
NEK3P51956 MIR6786-201ENST00000616843 113 ntBASIC19.55■□□□□ 0.72
NEK3P51956 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NEK3P51956 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NEK3P51956 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NEK3P51956 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms