Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIG3P49916 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 AC239809.2-201ENST00000415381 517 ntBASIC19.91■□□□□ 0.78
LIG3P49916 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.91■□□□□ 0.78
LIG3P49916 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.91■□□□□ 0.78
LIG3P49916 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.91■□□□□ 0.78
LIG3P49916 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 AP006294.2-201ENST00000641667 209 ntBASIC19.91■□□□□ 0.78
LIG3P49916 LINC01465-201ENST00000408887 1940 ntBASIC19.91■□□□□ 0.78
LIG3P49916 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIG3P49916 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIG3P49916 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
LIG3P49916 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LIG3P49916 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 UBE2SP1-201ENST00000450587 669 ntBASIC19.9■□□□□ 0.78
LIG3P49916 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 AC093827.2-201ENST00000512654 315 ntBASIC19.9■□□□□ 0.78
LIG3P49916 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.9■□□□□ 0.78
LIG3P49916 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.9■□□□□ 0.78
LIG3P49916 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 AC124016.1-201ENST00000609552 612 ntBASIC19.9■□□□□ 0.78
LIG3P49916 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
LIG3P49916 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LIG3P49916 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
LIG3P49916 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.9■□□□□ 0.78
LIG3P49916 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIG3P49916 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.9■□□□□ 0.78
LIG3P49916 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIG3P49916 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIG3P49916 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIG3P49916 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIG3P49916 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIG3P49916 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.89■□□□□ 0.77
LIG3P49916 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
LIG3P49916 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 KRASP1-201ENST00000407852 552 ntBASIC19.89■□□□□ 0.77
LIG3P49916 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.89■□□□□ 0.77
LIG3P49916 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.89■□□□□ 0.77
LIG3P49916 PRKY-204ENST00000533551 1019 ntBASIC19.89■□□□□ 0.77
LIG3P49916 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.89■□□□□ 0.77
LIG3P49916 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LIG3P49916 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LIG3P49916 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
LIG3P49916 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIG3P49916 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
LIG3P49916 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms