Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CLIP1P30622 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CLIP1P30622 SPDYE15P-201ENST00000424157 909 ntBASIC30.16■■■□□ 2.42
CLIP1P30622 NMU-205ENST00000511469 756 ntTSL 3 BASIC30.16■■■□□ 2.42
CLIP1P30622 CD81-212ENST00000526072 1172 ntTSL 5 BASIC30.16■■■□□ 2.42
CLIP1P30622 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC30.16■■■□□ 2.42
CLIP1P30622 DBP-204ENST00000599385 709 ntTSL 3 BASIC30.16■■■□□ 2.42
CLIP1P30622 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC30.16■■■□□ 2.42
CLIP1P30622 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC30.16■■■□□ 2.42
CLIP1P30622 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CLIP1P30622 AL512353.2-201ENST00000448759 1962 ntBASIC30.16■■■□□ 2.42
CLIP1P30622 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
CLIP1P30622 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC30.16■■■□□ 2.42
CLIP1P30622 KATNBL1P6-202ENST00000562413 1466 ntBASIC30.16■■■□□ 2.42
CLIP1P30622 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CLIP1P30622 RCC2P3-201ENST00000418112 1537 ntBASIC30.15■■■□□ 2.42
CLIP1P30622 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC30.15■■■□□ 2.42
CLIP1P30622 AP000523.1-201ENST00000398242 1049 ntBASIC30.15■■■□□ 2.42
CLIP1P30622 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC30.15■■■□□ 2.42
CLIP1P30622 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC30.15■■■□□ 2.42
CLIP1P30622 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC30.15■■■□□ 2.42
CLIP1P30622 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
CLIP1P30622 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC30.15■■■□□ 2.42
CLIP1P30622 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CLIP1P30622 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC30.14■■■□□ 2.42
CLIP1P30622 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
CLIP1P30622 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
CLIP1P30622 GCSHP2-201ENST00000560971 527 ntBASIC30.14■■■□□ 2.42
CLIP1P30622 CLN6-204ENST00000564752 900 ntTSL 3 BASIC30.14■■■□□ 2.42
CLIP1P30622 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC30.14■■■□□ 2.42
CLIP1P30622 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC30.14■■■□□ 2.42
CLIP1P30622 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC30.14■■■□□ 2.42
CLIP1P30622 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CLIP1P30622 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
CLIP1P30622 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC30.14■■■□□ 2.41
CLIP1P30622 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
CLIP1P30622 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC30.13■■■□□ 2.41
CLIP1P30622 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 AP000550.4-202ENST00000639755 178 ntBASIC30.13■■■□□ 2.41
CLIP1P30622 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC30.13■■■□□ 2.41
CLIP1P30622 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC30.13■■■□□ 2.41
CLIP1P30622 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC30.13■■■□□ 2.41
CLIP1P30622 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC30.13■■■□□ 2.41
CLIP1P30622 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
CLIP1P30622 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC30.13■■■□□ 2.41
CLIP1P30622 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC30.13■■■□□ 2.41
CLIP1P30622 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC30.12■■■□□ 2.41
CLIP1P30622 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
CLIP1P30622 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
CLIP1P30622 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC30.12■■■□□ 2.41
CLIP1P30622 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CLIP1P30622 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC30.12■■■□□ 2.41
CLIP1P30622 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC30.12■■■□□ 2.41
CLIP1P30622 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC30.12■■■□□ 2.41
CLIP1P30622 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC30.12■■■□□ 2.41
CLIP1P30622 AL121956.5-201ENST00000625261 221 ntBASIC30.12■■■□□ 2.41
CLIP1P30622 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC30.11■■■□□ 2.41
CLIP1P30622 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC30.11■■■□□ 2.41
CLIP1P30622 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC30.11■■■□□ 2.41
CLIP1P30622 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC30.11■■■□□ 2.41
CLIP1P30622 HOMER2P1-201ENST00000455653 964 ntBASIC30.11■■■□□ 2.41
CLIP1P30622 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC30.11■■■□□ 2.41
CLIP1P30622 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC30.11■■■□□ 2.41
CLIP1P30622 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC30.11■■■□□ 2.41
CLIP1P30622 AC083849.1-201ENST00000615227 514 ntBASIC30.11■■■□□ 2.41
CLIP1P30622 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CLIP1P30622 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC30.1■■■□□ 2.41
CLIP1P30622 AL109659.2-201ENST00000606809 1674 ntBASIC30.1■■■□□ 2.41
CLIP1P30622 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC30.1■■■□□ 2.41
CLIP1P30622 KRT8P32-201ENST00000512863 1461 ntBASIC30.1■■■□□ 2.41
CLIP1P30622 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
CLIP1P30622 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms