Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 WIZP1-201ENST00000531444 2299 ntBASIC14.48□□□□□ -0.09
HLA-DMBP28068 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 AC128676.1-201ENST00000454392 318 ntBASIC14.48□□□□□ -0.09
HLA-DMBP28068 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.48□□□□□ -0.09
HLA-DMBP28068 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.48□□□□□ -0.09
HLA-DMBP28068 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 AC066615.1-201ENST00000640911 628 ntBASIC14.47□□□□□ -0.09
HLA-DMBP28068 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
HLA-DMBP28068 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.47□□□□□ -0.09
HLA-DMBP28068 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HLA-DMBP28068 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
HLA-DMBP28068 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms