Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC083849.1-201ENST00000615227 514 ntBASIC19.74■□□□□ 0.75
HMGA1P17096 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGA1P17096 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGA1P17096 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 FEM1AP3-201ENST00000403722 1741 ntBASIC19.73■□□□□ 0.75
HMGA1P17096 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HMGA1P17096 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGA1P17096 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HMGA1P17096 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGA1P17096 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGA1P17096 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGA1P17096 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGA1P17096 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HMGA1P17096 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.73■□□□□ 0.75
HMGA1P17096 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGA1P17096 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGA1P17096 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 AC005332.1-201ENST00000577698 1310 ntBASIC19.73■□□□□ 0.75
HMGA1P17096 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HMGA1P17096 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGA1P17096 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGA1P17096 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HMGA1P17096 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGA1P17096 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 IRX1P1-201ENST00000438849 1838 ntBASIC19.72■□□□□ 0.75
HMGA1P17096 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGA1P17096 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
HMGA1P17096 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGA1P17096 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGA1P17096 AC116407.4-201ENST00000623319 1061 ntBASIC19.72■□□□□ 0.75
HMGA1P17096 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGA1P17096 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 AL512353.2-201ENST00000448759 1962 ntBASIC19.72■□□□□ 0.75
HMGA1P17096 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGA1P17096 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.71■□□□□ 0.75
HMGA1P17096 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGA1P17096 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGA1P17096 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGA1P17096 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGA1P17096 AL136038.3-201ENST00000561909 1096 ntBASIC19.71■□□□□ 0.75
HMGA1P17096 AC024243.1-201ENST00000609234 778 ntBASIC19.71■□□□□ 0.75
HMGA1P17096 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.71■□□□□ 0.75
HMGA1P17096 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.71■□□□□ 0.75
HMGA1P17096 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
HMGA1P17096 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGA1P17096 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 IER3-202ENST00000376377 1350 ntBASIC19.7■□□□□ 0.74
HMGA1P17096 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
HMGA1P17096 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.7■□□□□ 0.74
HMGA1P17096 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
HMGA1P17096 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 AC141586.3-201ENST00000562166 1838 ntBASIC19.7■□□□□ 0.74
HMGA1P17096 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.7■□□□□ 0.74
HMGA1P17096 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
HMGA1P17096 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.7■□□□□ 0.74
HMGA1P17096 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 SPDYE13P-201ENST00000445314 798 ntBASIC19.7■□□□□ 0.74
HMGA1P17096 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 ZNF444P1-201ENST00000559497 298 ntBASIC19.7■□□□□ 0.74
HMGA1P17096 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.7■□□□□ 0.74
HMGA1P17096 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGA1P17096 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms