Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MMP3P08254 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.05■□□□□ 0.96
MMP3P08254 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
MMP3P08254 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.04■□□□□ 0.96
MMP3P08254 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
MMP3P08254 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.04■□□□□ 0.96
MMP3P08254 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.04■□□□□ 0.96
MMP3P08254 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.04■□□□□ 0.96
MMP3P08254 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MMP3P08254 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.04■□□□□ 0.96
MMP3P08254 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
MMP3P08254 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.03■□□□□ 0.96
MMP3P08254 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.03■□□□□ 0.96
MMP3P08254 AC112497.1-201ENST00000624824 639 ntBASIC21.03■□□□□ 0.96
MMP3P08254 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 AC125437.2-201ENST00000625180 2167 ntBASIC21.03■□□□□ 0.96
MMP3P08254 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.03■□□□□ 0.96
MMP3P08254 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MMP3P08254 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.02■□□□□ 0.96
MMP3P08254 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
MMP3P08254 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 AC012313.10-201ENST00000623509 926 ntBASIC21.02■□□□□ 0.96
MMP3P08254 AC079602.3-201ENST00000623931 403 ntBASIC21.02■□□□□ 0.96
MMP3P08254 AL157888.1-201ENST00000631930 593 ntBASIC21.02■□□□□ 0.96
MMP3P08254 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
MMP3P08254 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MMP3P08254 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.02■□□□□ 0.96
MMP3P08254 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
MMP3P08254 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MMP3P08254 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
MMP3P08254 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
MMP3P08254 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP3P08254 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
MMP3P08254 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.01■□□□□ 0.95
MMP3P08254 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP3P08254 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP3P08254 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.01■□□□□ 0.95
MMP3P08254 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.01■□□□□ 0.95
MMP3P08254 AC092119.3-201ENST00000612618 583 ntBASIC21.01■□□□□ 0.95
MMP3P08254 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms