Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 TMPOP1-202ENST00000424642 1267 ntBASIC18.35■□□□□ 0.53
LDLRP01130 KRT18P35-201ENST00000510488 1269 ntBASIC18.35■□□□□ 0.53
LDLRP01130 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.35■□□□□ 0.53
LDLRP01130 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.35■□□□□ 0.53
LDLRP01130 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 AC009113.1-201ENST00000570267 2443 ntBASIC18.35■□□□□ 0.53
LDLRP01130 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LDLRP01130 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDLRP01130 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.34■□□□□ 0.53
LDLRP01130 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.34■□□□□ 0.53
LDLRP01130 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.34■□□□□ 0.53
LDLRP01130 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LDLRP01130 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.34■□□□□ 0.53
LDLRP01130 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.34■□□□□ 0.53
LDLRP01130 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.34■□□□□ 0.53
LDLRP01130 CD177P1-201ENST00000606252 935 ntBASIC18.34■□□□□ 0.53
LDLRP01130 AC113410.3-201ENST00000623366 203 ntBASIC18.34■□□□□ 0.53
LDLRP01130 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 AC005332.8-201ENST00000622750 2735 ntBASIC18.34■□□□□ 0.53
LDLRP01130 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDLRP01130 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.33■□□□□ 0.53
LDLRP01130 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
LDLRP01130 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
LDLRP01130 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDLRP01130 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
LDLRP01130 AL161938.1-201ENST00000569833 2180 ntBASIC18.33■□□□□ 0.52
LDLRP01130 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.33■□□□□ 0.52
LDLRP01130 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.33■□□□□ 0.52
LDLRP01130 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
LDLRP01130 AL355075.4-201ENST00000554988 638 ntBASIC18.33■□□□□ 0.52
LDLRP01130 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.33■□□□□ 0.52
LDLRP01130 AL390961.4-201ENST00000623958 2535 ntBASIC18.33■□□□□ 0.52
LDLRP01130 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LDLRP01130 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDLRP01130 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LDLRP01130 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.32■□□□□ 0.52
LDLRP01130 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.32■□□□□ 0.52
LDLRP01130 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LDLRP01130 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.32■□□□□ 0.52
LDLRP01130 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LDLRP01130 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.32■□□□□ 0.52
LDLRP01130 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.32■□□□□ 0.52
LDLRP01130 AL023875.1-201ENST00000640777 796 ntBASIC18.32■□□□□ 0.52
LDLRP01130 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.32■□□□□ 0.52
LDLRP01130 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
LDLRP01130 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.32■□□□□ 0.52
LDLRP01130 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDLRP01130 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.32■□□□□ 0.52
LDLRP01130 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.32■□□□□ 0.52
LDLRP01130 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms