Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
VPS4BO75351 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS4BO75351 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 AC239809.2-201ENST00000415381 517 ntBASIC18.62■□□□□ 0.57
VPS4BO75351 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4BO75351 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4BO75351 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS4BO75351 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
VPS4BO75351 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS4BO75351 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS4BO75351 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS4BO75351 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 AP006587.1-201ENST00000534129 1502 ntBASIC18.61■□□□□ 0.57
VPS4BO75351 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS4BO75351 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS4BO75351 RCN1P1-201ENST00000400413 996 ntBASIC18.61■□□□□ 0.57
VPS4BO75351 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS4BO75351 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS4BO75351 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS4BO75351 AL445228.2-201ENST00000605589 952 ntBASIC18.61■□□□□ 0.57
VPS4BO75351 AL023875.1-201ENST00000640777 796 ntBASIC18.61■□□□□ 0.57
VPS4BO75351 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS4BO75351 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
VPS4BO75351 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS4BO75351 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.61■□□□□ 0.57
VPS4BO75351 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
VPS4BO75351 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 ARMC10P1-201ENST00000313754 855 ntBASIC18.6■□□□□ 0.57
VPS4BO75351 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS4BO75351 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS4BO75351 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
VPS4BO75351 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 AL121906.2-201ENST00000621597 723 ntBASIC18.6■□□□□ 0.57
VPS4BO75351 AC097493.4-201ENST00000641197 219 ntBASIC18.6■□□□□ 0.57
VPS4BO75351 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS4BO75351 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS4BO75351 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS4BO75351 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VPS4BO75351 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms