Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
LDB3O75112 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.89■□□□□ 0.45
LDB3O75112 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.89■□□□□ 0.45
LDB3O75112 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.89■□□□□ 0.45
LDB3O75112 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.89■□□□□ 0.45
LDB3O75112 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.89■□□□□ 0.45
LDB3O75112 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LDB3O75112 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 AC096733.2-201ENST00000609937 1394 ntBASIC17.89■□□□□ 0.45
LDB3O75112 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LDB3O75112 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.88■□□□□ 0.45
LDB3O75112 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.88■□□□□ 0.45
LDB3O75112 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LDB3O75112 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.88■□□□□ 0.45
LDB3O75112 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LDB3O75112 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LDB3O75112 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.87■□□□□ 0.45
LDB3O75112 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
LDB3O75112 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
LDB3O75112 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LDB3O75112 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.87■□□□□ 0.45
LDB3O75112 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.87■□□□□ 0.45
LDB3O75112 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.87■□□□□ 0.45
LDB3O75112 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDB3O75112 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LDB3O75112 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.87■□□□□ 0.45
LDB3O75112 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 AP000974.1-201ENST00000623909 2387 ntBASIC17.86■□□□□ 0.45
LDB3O75112 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.86■□□□□ 0.45
LDB3O75112 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 FITM1-202ENST00000559294 800 ntBASIC17.86■□□□□ 0.45
LDB3O75112 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.86■□□□□ 0.45
LDB3O75112 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.86■□□□□ 0.45
LDB3O75112 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDB3O75112 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.86■□□□□ 0.45
LDB3O75112 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.86■□□□□ 0.45
LDB3O75112 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDB3O75112 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms