Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.72■□□□□ 0.59
TRIM13O60858 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.72■□□□□ 0.59
TRIM13O60858 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
TRIM13O60858 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
TRIM13O60858 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
TRIM13O60858 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
TRIM13O60858 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM13O60858 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
TRIM13O60858 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TRIM13O60858 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM13O60858 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM13O60858 AC097658.1-201ENST00000475555 843 ntBASIC18.71■□□□□ 0.59
TRIM13O60858 PNMA6B-201ENST00000538162 1200 ntBASIC18.71■□□□□ 0.59
TRIM13O60858 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.71■□□□□ 0.59
TRIM13O60858 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.71■□□□□ 0.59
TRIM13O60858 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM13O60858 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 NOC2LP1-202ENST00000452600 2235 ntBASIC18.71■□□□□ 0.59
TRIM13O60858 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.71■□□□□ 0.59
TRIM13O60858 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TRIM13O60858 AC005332.8-201ENST00000622750 2735 ntBASIC18.71■□□□□ 0.59
TRIM13O60858 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TRIM13O60858 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 TSPY21P-201ENST00000433481 731 ntBASIC18.7■□□□□ 0.58
TRIM13O60858 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.7■□□□□ 0.58
TRIM13O60858 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
TRIM13O60858 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.7■□□□□ 0.58
TRIM13O60858 AC060766.5-201ENST00000590539 871 ntBASIC18.7■□□□□ 0.58
TRIM13O60858 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TRIM13O60858 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TRIM13O60858 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TRIM13O60858 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM13O60858 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 AC090340.1-201ENST00000620778 4980 ntBASIC18.69■□□□□ 0.58
TRIM13O60858 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM13O60858 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM13O60858 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
TRIM13O60858 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TRIM13O60858 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.69■□□□□ 0.58
TRIM13O60858 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.69■□□□□ 0.58
TRIM13O60858 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.69■□□□□ 0.58
TRIM13O60858 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms