Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 NBPF21P-201ENST00000425093 1451 ntBASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CPSF4LA6NMK7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 AC008403.3-201ENST00000598924 454 ntBASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CPSF4LA6NMK7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 AL031598.1-201ENST00000561511 1773 ntBASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 RNA5SP413-201ENST00000516373 109 ntBASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CPSF4LA6NMK7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms