Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV1-1A0A0B4J248 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 AC131281.2-201ENST00000520478 145 ntBASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 AL136162.1-201ENST00000607711 1078 ntBASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 AC135279.3-201ENST00000610945 1311 ntBASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV1-1A0A0B4J248 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 AC135776.1-201ENST00000319817 2481 ntBASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 AL591742.1-201ENST00000604433 565 ntBASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 TFP1-202ENST00000475455 1573 ntBASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV1-1A0A0B4J248 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 AL162412.1-201ENST00000567129 965 ntBASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
TRAV1-1A0A0B4J248 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms