Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MIR423-201ENST00000362201 94 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 SNORD56.1-201ENST00000362913 68 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-428P-201ENST00000362942 107 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-105P-201ENST00000363909 104 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RHOT1P2-201ENST00000366423 333 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-1083P-201ENST00000384022 107 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-843P-201ENST00000384454 104 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC074117.2-201ENST00000417130 397 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC013470.1-201ENST00000453438 462 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC133134.1-201ENST00000466800 359 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RPL12P50-201ENST00000603116 116 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-91P-201ENST00000607774 107 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC064836.2-201ENST00000609491 462 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC099778.2-201ENST00000610904 211 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AL355073.2-201ENST00000612106 557 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 RBBP8P1-201ENST00000449447 1844 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 AC058791.1-201ENST00000608412 3198 ntBASIC4.67□□□□□ -1.66
CCDC9Q9Y3X0 MTND4P12-201ENST00000498999 1377 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 Y_RNA.135-201ENST00000363439 95 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 SNORD116-11-201ENST00000383882 92 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AP001324.2-201ENST00000461163 319 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 RNU5B-3P-201ENST00000516601 115 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC009314.1-201ENST00000603871 304 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AL162713.1-201ENST00000604480 262 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC019159.1-201ENST00000605094 187 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AL033523.1-201ENST00000605153 153 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC013412.1-201ENST00000610687 192 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AP003355.3-201ENST00000623465 114 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC244517.12-201ENST00000623581 663 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AC097372.5-201ENST00000623665 376 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 Z83843.1-201ENST00000604070 3685 ntBASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC9Q9Y3X0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.65□□□□□ -1.66
CCDC9Q9Y3X0 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC9Q9Y3X0 RNU6-336P-201ENST00000364891 107 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 Y_RNA.301-201ENST00000364990 103 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-487P-201ENST00000365430 104 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AL357075.1-201ENST00000404107 726 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 RPL7P37-201ENST00000425095 738 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC004383.1-201ENST00000438135 289 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 RPL23AP58-201ENST00000440453 469 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 USP9YP8-201ENST00000441913 500 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC006445.1-201ENST00000491925 405 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-566P-201ENST00000516790 107 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC005476.1-201ENST00000554427 397 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC096772.1-201ENST00000609146 564 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 uc_338.15-201ENST00000615470 191 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC063943.3-201ENST00000615562 356 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC024581.2-201ENST00000619986 252 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 AC138627.2-201ENST00000624202 601 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 ZNF826P-207ENST00000622273 1910 ntBASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC9Q9Y3X0 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AL138885.1-201ENST00000405921 675 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 TRIAP1P1-201ENST00000427062 225 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AC130509.1-201ENST00000464158 433 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 SCARNA17.1-201ENST00000516211 143 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 SCARNA17.2-201ENST00000516334 143 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-1088P-201ENST00000516850 104 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 SCARNA11.3-201ENST00000517276 130 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 SCARNA17.4-201ENST00000614296 143 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AC103858.2-201ENST00000621471 543 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AC092435.3-201ENST00000565538 3654 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 AC006504.1-201ENST00000562493 3666 ntBASIC4.64□□□□□ -1.67
CCDC9Q9Y3X0 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC9Q9Y3X0 RNU6-933P-201ENST00000384424 107 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms