Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNA5SP173-201ENST00000364857 136 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 RNU6-728P-201ENST00000365375 104 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 RNU6-969P-201ENST00000383900 105 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 SNORA70.10-201ENST00000384515 134 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 SNORA70C-201ENST00000384538 135 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 SNORD72-201ENST00000390994 80 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 RNU6-1228P-201ENST00000391014 107 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 AL592291.1-201ENST00000403830 352 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 AC007560.1-201ENST00000426912 237 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.29□□□□□ -1.72
COL8A1P27658 AC112220.1-201ENST00000434628 355 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 AL078601.1-201ENST00000444542 271 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 RPL39P29-201ENST00000447779 157 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 snoU109.2-201ENST00000459316 135 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 HSPE1P6-201ENST00000479457 291 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.29□□□□□ -1.72
COL8A1P27658 RNA5SP54-201ENST00000516951 92 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.29□□□□□ -1.72
COL8A1P27658 MIR3158-1-201ENST00000583596 81 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 AL034549.2-201ENST00000618285 3373 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL8A1P27658 AP000542.2-201ENST00000623199 6179 ntBASIC4.29□□□□□ -1.72
COL8A1P27658 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL8A1P27658 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.29□□□□□ -1.72
COL8A1P27658 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL8A1P27658 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 RNU6-1131P-201ENST00000364955 107 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 RNU6-72P-201ENST00000384285 79 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 RNU6-106P-201ENST00000384405 107 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 RNU6-19P-201ENST00000384718 107 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 AC016831.4-201ENST00000438302 307 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.28□□□□□ -1.72
COL8A1P27658 RPL30P12-201ENST00000474666 353 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 RPS4XP13-201ENST00000483219 789 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 RNU6-436P-201ENST00000516171 114 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.28□□□□□ -1.72
COL8A1P27658 AC006380.1-201ENST00000603598 186 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 FAM27B-201ENST00000610601 213 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 AC114781.5-201ENST00000615297 108 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL8A1P27658 AC112200.1-201ENST00000625015 234 ntBASIC4.28□□□□□ -1.72
COL8A1P27658 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
COL8A1P27658 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL8A1P27658 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.28□□□□□ -1.72
COL8A1P27658 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.28□□□□□ -1.73
COL8A1P27658 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC4.28□□□□□ -1.73
COL8A1P27658 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL8A1P27658 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 AL672167.1-205ENST00000641112 3080 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
COL8A1P27658 RNU1-94P-201ENST00000362627 173 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 SNORD114-19-201ENST00000363072 75 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RNU6-1249P-201ENST00000363237 111 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RNU6-525P-201ENST00000363685 104 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 U3.9-201ENST00000363823 204 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RN7SKP280-201ENST00000364196 304 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 SNORD58C-201ENST00000365223 64 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
COL8A1P27658 ELOCP21-201ENST00000412558 336 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RPL23AP95-201ENST00000426806 265 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 RPS12P10-201ENST00000427031 377 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.27□□□□□ -1.73
COL8A1P27658 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.27□□□□□ -1.73
COL8A1P27658 AC073465.2-201ENST00000440938 498 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AL358232.1-201ENST00000448030 501 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 HMGB3P8-201ENST00000449709 577 ntBASIC4.27□□□□□ -1.73
COL8A1P27658 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.27□□□□□ -1.73
COL8A1P27658 SCARNA13-201ENST00000516672 275 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms