RNA–Protein interactions for RNA: ENST00000449709.1

HMGB3P8-201, Transcript of high mobility group box 3 pseudogene 8, humanhuman

BASIC

Gene HMGB3P8, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P8-201ENST00000449709 AEBP2Q6ZN18 517 aaPredicted RBP13.51□□□□□ -0.25
HMGB3P8-201ENST00000449709 CHIC1Q5VXU3 224 aa12.81□□□□□ -0.36
HMGB3P8-201ENST00000449709 SENP3Q9H4L4 574 aaPredicted RBP11.47□□□□□ -0.57
HMGB3P8-201ENST00000449709 PHF23Q9BUL5 403 aaPredicted RBP11.35□□□□□ -0.59
HMGB3P8-201ENST00000449709 FOXD1Q16676 465 aa10.73□□□□□ -0.69
HMGB3P8-201ENST00000449709 POTEDQ86YR6 584 aa10.47□□□□□ -0.73
HMGB3P8-201ENST00000449709 PLPPR3Q6T4P5 718 aa10.23□□□□□ -0.77
HMGB3P8-201ENST00000449709 PPP6R1Q9UPN7 881 aa10.07□□□□□ -0.8
HMGB3P8-201ENST00000449709 ADRA2BP18089 450 aa10.04□□□□□ -0.8
HMGB3P8-201ENST00000449709 PIAS4Q8N2W9 510 aaPredicted RBP10.03□□□□□ -0.8
HMGB3P8-201ENST00000449709 MSH5O43196 834 aa9.98□□□□□ -0.81
HMGB3P8-201ENST00000449709 MAPK8IP2Q13387 824 aaPredicted RBP9.22□□□□□ -0.93
HMGB3P8-201ENST00000449709 SCAF1Q9H7N4 1312 aaKnown RBP9.11□□□□□ -0.95
HMGB3P8-201ENST00000449709 DMRT2Q9Y5R5 561 aa9.11□□□□□ -0.95
HMGB3P8-201ENST00000449709 PPP4R3CPQ6ZMV5 832 aa9□□□□□ -0.97
HMGB3P8-201ENST00000449709 CNKSR2Q8WXI2 1034 aa8.8□□□□□ -1
HMGB3P8-201ENST00000449709 HOXD11P31277 338 aaPredicted RBP8.78□□□□□ -1
HMGB3P8-201ENST00000449709 DCAF8L1A6NGE4 600 aa8.76□□□□□ -1.01
HMGB3P8-201ENST00000449709 RNF216Q9NWF9 866 aaPredicted RBP8.71□□□□□ -1.02
HMGB3P8-201ENST00000449709 CACNB1Q02641 598 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P8-201ENST00000449709 NCBP3Q53F19 620 aaKnown RBP8.62□□□□□ -1.03
HMGB3P8-201ENST00000449709 NPM3O75607 178 aaKnown RBP8.54□□□□□ -1.04
HMGB3P8-201ENST00000449709 RNF39Q9H2S5 420 aa8.54□□□□□ -1.04
HMGB3P8-201ENST00000449709 DNAJC5BQ9UF47 199 aa8.42□□□□□ -1.06
HMGB3P8-201ENST00000449709 KCNA4P22459 653 aa8.41□□□□□ -1.06
HMGB3P8-201ENST00000449709 C1QBPQ07021 282 aaKnown RBP8.4□□□□□ -1.06
HMGB3P8-201ENST00000449709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.37□□□□□ -1.07
HMGB3P8-201ENST00000449709 EHMT2Q96KQ7 1210 aa8.29□□□□□ -1.08
HMGB3P8-201ENST00000449709 U3KPZ7 1027 aaPredicted RBP8.21□□□□□ -1.1
HMGB3P8-201ENST00000449709 SLC4A2P04920 1241 aa8.16□□□□□ -1.1
HMGB3P8-201ENST00000449709 SPINK5Q9NQ38 1064 aaPredicted RBP8.1□□□□□ -1.11
HMGB3P8-201ENST00000449709 CAPN15O75808 1086 aa8.07□□□□□ -1.12
HMGB3P8-201ENST00000449709 POTEHQ6S545 545 aa8.06□□□□□ -1.12
HMGB3P8-201ENST00000449709 CSRNP3Q8WYN3 585 aa8.03□□□□□ -1.12
HMGB3P8-201ENST00000449709 SLC4A1APQ9BWU0 796 aaKnown RBP8.03□□□□□ -1.12
HMGB3P8-201ENST00000449709 DSG3P32926 999 aa8.01□□□□□ -1.13
HMGB3P8-201ENST00000449709 TRHP20396 242 aaPredicted RBP7.95□□□□□ -1.14
HMGB3P8-201ENST00000449709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.92□□□□□ -1.14
HMGB3P8-201ENST00000449709 ABCB7O75027 752 aa7.92□□□□□ -1.14
HMGB3P8-201ENST00000449709 APLP2Q06481 763 aa7.92□□□□□ -1.14
HMGB3P8-201ENST00000449709 HNRNPUL2Q1KMD3 747 aaKnown RBP7.92□□□□□ -1.14
HMGB3P8-201ENST00000449709 SAMD1Q6SPF0 538 aaPredicted RBP7.9□□□□□ -1.14
HMGB3P8-201ENST00000449709 ZNF219Q9P2Y4 722 aaPredicted RBP7.89□□□□□ -1.15
HMGB3P8-201ENST00000449709 MYCNP04198 464 aaPredicted RBP7.87□□□□□ -1.15
HMGB3P8-201ENST00000449709 FOXD4L1Q9NU39 408 aa7.8□□□□□ -1.16
HMGB3P8-201ENST00000449709 ZBTB22O15209 634 aa7.75□□□□□ -1.17
HMGB3P8-201ENST00000449709 ATF5Q9Y2D1 282 aaPredicted RBP7.75□□□□□ -1.17
HMGB3P8-201ENST00000449709 POLA2Q14181 598 aa7.74□□□□□ -1.17
HMGB3P8-201ENST00000449709 RBM42Q9BTD8 480 aaKnown RBP7.6□□□□□ -1.19
HMGB3P8-201ENST00000449709 ATXN8OSP0DMR3 200 aa7.54□□□□□ -1.2
HMGB3P8-201ENST00000449709 ZBTB12Q9Y330 459 aaPredicted RBP7.54□□□□□ -1.2
HMGB3P8-201ENST00000449709 OSCARQ8IYS5 282 aa7.5□□□□□ -1.21
HMGB3P8-201ENST00000449709 CHRDL2Q6WN34 429 aa7.47□□□□□ -1.21
HMGB3P8-201ENST00000449709 AKT1S1Q96B36 256 aa7.45□□□□□ -1.22
HMGB3P8-201ENST00000449709 REM2Q8IYK8 340 aaPredicted RBP7.41□□□□□ -1.22
HMGB3P8-201ENST00000449709 FBLN2P98095 1184 aa7.39□□□□□ -1.23
HMGB3P8-201ENST00000449709 MKRN4PQ13434 485 aaPredicted RBP7.38□□□□□ -1.23
HMGB3P8-201ENST00000449709 RTN4Q9NQC3 1192 aaKnown RBP7.35□□□□□ -1.23
HMGB3P8-201ENST00000449709 PITPNM1O00562 1244 aa7.34□□□□□ -1.23
HMGB3P8-201ENST00000449709 AMER1Q5JTC6 1135 aaPredicted RBP7.34□□□□□ -1.23
HMGB3P8-201ENST00000449709 SLC24A1O60721 1099 aa7.33□□□□□ -1.24
HMGB3P8-201ENST00000449709 SPDYE2BA6NHP3 402 aa7.32□□□□□ -1.24
HMGB3P8-201ENST00000449709 SPDYE6P0CI01 402 aa7.32□□□□□ -1.24
HMGB3P8-201ENST00000449709 SPDYE2Q495Y8 402 aa7.32□□□□□ -1.24
HMGB3P8-201ENST00000449709 PIP4P2Q8N4L2 257 aa7.3□□□□□ -1.24
HMGB3P8-201ENST00000449709 SP7Q8TDD2 431 aaPredicted RBP7.27□□□□□ -1.25
HMGB3P8-201ENST00000449709 FXR2P51116 673 aaKnown RBP eCLIP7.25□□□□□ -1.25
HMGB3P8-201ENST00000449709 ZNF692Q9BU19 519 aaPredicted RBP7.25□□□□□ -1.25
HMGB3P8-201ENST00000449709 SSUH2Q9Y2M2 353 aa7.24□□□□□ -1.25
HMGB3P8-201ENST00000449709 CLEC11AQ9Y240 323 aa7.21□□□□□ -1.26
HMGB3P8-201ENST00000449709 FKBP8Q14318 412 aa7.2□□□□□ -1.26
HMGB3P8-201ENST00000449709 SPDYE1Q8NFV5 336 aaPredicted RBP7.19□□□□□ -1.26
HMGB3P8-201ENST00000449709 HAX1O00165 279 aa7.17□□□□□ -1.26
HMGB3P8-201ENST00000449709 PABPN1Q86U42 306 aaKnown RBP eCLIP7.16□□□□□ -1.26
HMGB3P8-201ENST00000449709 PRKAR2AP13861 404 aaKnown RBP7.14□□□□□ -1.27
HMGB3P8-201ENST00000449709 EVX2Q03828 476 aa7.12□□□□□ -1.27
HMGB3P8-201ENST00000449709 CHADLQ6NUI6 762 aa7.09□□□□□ -1.27
HMGB3P8-201ENST00000449709 PRR29P0C7W0 189 aa7.07□□□□□ -1.28
HMGB3P8-201ENST00000449709 C19orf67A6NJJ6 358 aa7.02□□□□□ -1.29
HMGB3P8-201ENST00000449709 SPDYE4A6NLX3 237 aa7.02□□□□□ -1.29
HMGB3P8-201ENST00000449709 FARP1Q9Y4F1 1045 aaPredicted RBP6.96□□□□□ -1.3
HMGB3P8-201ENST00000449709 CREBZFQ9NS37 354 aa6.92□□□□□ -1.3
HMGB3P8-201ENST00000449709 STAG3Q9UJ98 1225 aa6.92□□□□□ -1.3
HMGB3P8-201ENST00000449709 GABBR2O75899 941 aa6.91□□□□□ -1.3
HMGB3P8-201ENST00000449709 CD44P16070 742 aaKnown RBP6.91□□□□□ -1.3
HMGB3P8-201ENST00000449709 PLSCR2Q9NRY7 297 aa6.86□□□□□ -1.31
HMGB3P8-201ENST00000449709 PROM2Q8N271 834 aa6.84□□□□□ -1.31
HMGB3P8-201ENST00000449709 ZRANB1Q9UGI0 708 aa6.82□□□□□ -1.32
HMGB3P8-201ENST00000449709 FBXO3Q9UK99 471 aa6.82□□□□□ -1.32
HMGB3P8-201ENST00000449709 MNX1P50219 401 aaPredicted RBP6.81□□□□□ -1.32
HMGB3P8-201ENST00000449709 LHX8Q68G74 356 aa6.81□□□□□ -1.32
HMGB3P8-201ENST00000449709 POTEIP0CG38 1075 aa6.8□□□□□ -1.32
HMGB3P8-201ENST00000449709 ZNF579Q8NAF0 562 aaKnown RBP6.8□□□□□ -1.32
HMGB3P8-201ENST00000449709 PLCB2Q00722 1185 aa6.77□□□□□ -1.33
HMGB3P8-201ENST00000449709 NPM1P06748 294 aaKnown RBP eCLIP6.76□□□□□ -1.33
HMGB3P8-201ENST00000449709 CLCN6P51797 869 aa6.75□□□□□ -1.33
HMGB3P8-201ENST00000449709 PHF12Q96QT6 1004 aa6.75□□□□□ -1.33
HMGB3P8-201ENST00000449709 GALR2O43603 387 aaPredicted RBP6.74□□□□□ -1.33
HMGB3P8-201ENST00000449709 PAK3O75914 559 aaPredicted RBP6.74□□□□□ -1.33
HMGB3P8-201ENST00000449709 VASPP50552 380 aaPredicted RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms