Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC069499.1-201ENST00000489433 509 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC011494.1-201ENST00000596454 237 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC092447.9-201ENST00000603395 144 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC018889.1-201ENST00000605372 397 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AL161423.1-201ENST00000613700 262 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AL450472.3-201ENST00000615578 367 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
USHBP1Q8N6Y0 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
USHBP1Q8N6Y0 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
USHBP1Q8N6Y0 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-99P-201ENST00000364721 107 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MIR93-201ENST00000385024 80 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 HSPE1P8-201ENST00000406997 288 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AC008264.1-201ENST00000447612 367 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 RPL31P60-201ENST00000478450 367 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-1095P-201ENST00000516148 108 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 SCARNA16.2-201ENST00000516520 172 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 RNA5SP384-201ENST00000516615 116 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AL139395.1-201ENST00000603662 160 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 LINC00901.1-201ENST00000617252 152 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 BMS1P21-201ENST00000634565 365 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MIR4275-201ENST00000636486 87 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 AC006504.1-201ENST00000562493 3666 ntBASIC4.58□□□□□ -1.68
USHBP1Q8N6Y0 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 Y_RNA.111-201ENST00000363248 100 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNA5SP42-201ENST00000364278 115 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-26P-201ENST00000383985 107 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-45P-201ENST00000384471 107 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 SNORA70E-201ENST00000384492 135 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-14P-201ENST00000384630 106 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 SNORA41-201ENST00000384675 132 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 MIR634-201ENST00000385208 97 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-1109P-201ENST00000391187 107 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-101P-201ENST00000410323 104 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU4-78P-201ENST00000410940 126 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC092809.3-201ENST00000415453 231 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RPL23AP50-201ENST00000434149 455 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 HMGB3P30-201ENST00000457863 606 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-953P-201ENST00000459154 107 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RPL37P6-201ENST00000460682 294 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC010655.3-201ENST00000478818 450 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 RPL21P13-201ENST00000488305 481 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC025423.5-201ENST00000550230 219 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 MIR5680-201ENST00000577577 84 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 KLKP1-201ENST00000595979 403 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC012119.1-201ENST00000603184 222 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AL137843.1-201ENST00000605078 385 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AC100812.1-201ENST00000607622 580 ntBASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.57□□□□□ -1.68
USHBP1Q8N6Y0 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 Z73965.1-201ENST00000623412 2297 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 SNORA63.7-201ENST00000365579 123 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-306P-201ENST00000384617 107 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 U3.39-201ENST00000408569 239 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-55P-201ENST00000411092 107 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 UBE2V1P4-201ENST00000425374 344 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AC090774.1-201ENST00000435925 246 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AL121871.1-201ENST00000443413 436 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AP000926.1-201ENST00000479573 241 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AC068781.1-201ENST00000488231 618 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AC092436.3-201ENST00000511788 257 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-475P-201ENST00000516073 104 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-120P-201ENST00000516077 103 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 RNU6-579P-201ENST00000516879 102 ntBASIC4.56□□□□□ -1.68
USHBP1Q8N6Y0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms