Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
USHBP1Q8N6Y0 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RNA5SP197-201ENST00000363357 119 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.153-201ENST00000363615 91 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 SNORD74.4-201ENST00000364129 80 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 SNORA23-201ENST00000365128 182 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.389-201ENST00000383924 113 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.645-201ENST00000391229 102 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RPS4XP7-201ENST00000406274 780 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC096664.2-201ENST00000411843 406 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AL160275.2-201ENST00000412010 394 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC080125.1-201ENST00000414888 684 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 USMG5P1-201ENST00000425964 177 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 MRPS18BP2-201ENST00000434310 759 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AL359672.1-201ENST00000442302 409 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AP001486.1-201ENST00000463339 476 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC084357.1-201ENST00000473404 255 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RPL21P103-201ENST00000479921 488 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC110794.1-201ENST00000505816 425 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RNU1-103P-201ENST00000516502 125 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-307P-201ENST00000516743 106 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-264P-201ENST00000517134 104 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.721-201ENST00000517207 102 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 MIR4458-201ENST00000578872 75 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 AC005899.2-201ENST00000584353 90 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 IGHV3-29-201ENST00000604817 344 ntBASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
USHBP1Q8N6Y0 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 HSPA8P4-201ENST00000511877 1920 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-238P-201ENST00000363313 106 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-784P-201ENST00000384330 106 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC110754.1-201ENST00000399740 601 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-293P-201ENST00000411259 106 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AL137014.1-201ENST00000420490 1226 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 DPH3P2-201ENST00000422618 250 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC087884.1-201ENST00000469738 328 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AL049873.1-201ENST00000480540 376 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC022493.2-201ENST00000506122 481 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNA5SP154-201ENST00000516193 111 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RN7SKP209-201ENST00000516888 304 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-677P-201ENST00000516914 101 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 RN7SKP60-201ENST00000516985 239 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 NUTF2P8-201ENST00000604593 363 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AP003355.3-201ENST00000623465 114 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 MIR6715B-201ENST00000637172 77 ntBASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
USHBP1Q8N6Y0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 MIR448-201ENST00000362131 111 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 Y_RNA.2-201ENST00000362330 96 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 RNU6-190P-201ENST00000384154 102 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 MIR135A2-201ENST00000384854 100 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 SNORA48.5-201ENST00000391143 135 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC063979.1-201ENST00000415539 377 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 USP9YP30-201ENST00000430729 455 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AL645568.3-201ENST00000433683 316 ntBASIC4.59□□□□□ -1.67
USHBP1Q8N6Y0 AC004866.2-201ENST00000438285 481 ntBASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms