Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 PRSS44-201ENST00000515154 1146 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AF186192.3-201ENST00000583427 947 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AC073195.1-201ENST00000607241 877 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AL359736.2-201ENST00000621992 437 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 AL031985.4-201ENST00000642138 673 ntBASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS9D1Q9Y2B5 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VPS9D1Q9Y2B5 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS9D1Q9Y2B5 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 AC004951.3-201ENST00000418645 1148 ntBASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 RPS2P4-201ENST00000476944 856 ntBASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS9D1Q9Y2B5 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS9D1Q9Y2B5 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS9D1Q9Y2B5 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS9D1Q9Y2B5 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS9D1Q9Y2B5 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS9D1Q9Y2B5 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms