Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 AC124016.1-201ENST00000609552 612 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 Six3os1_6.1-201ENST00000620790 196 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 FAM197Y4-202ENST00000622692 608 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TMEM191A-211ENST00000637163 1067 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 UBQLN4P1-201ENST00000461599 1801 ntBASIC15.4■□□□□ 0.06
FOXA2Q9Y261 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
FOXA2Q9Y261 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 AC133681.1-201ENST00000465482 601 ntBASIC15.39■□□□□ 0.05
FOXA2Q9Y261 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 RPPH1-201ENST00000516869 333 ntBASIC15.39■□□□□ 0.05
FOXA2Q9Y261 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 FEM1AP3-201ENST00000403722 1741 ntBASIC15.39■□□□□ 0.05
FOXA2Q9Y261 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
FOXA2Q9Y261 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 AC110285.5-201ENST00000611501 352 ntBASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.38■□□□□ 0.05
FOXA2Q9Y261 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 ADK-206ENST00000541550 2222 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms