Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CLCF1Q9UBD9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CLCF1Q9UBD9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 COX11P1-201ENST00000489116 835 ntBASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 WWOX-216ENST00000569818 525 ntBASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MIR4674-201ENST00000582457 87 ntBASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 AC139887.4-201ENST00000607877 719 ntBASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.92■□□□□ 0.3
CLCF1Q9UBD9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 YBX1P2-201ENST00000489612 999 ntBASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 AC063952.2-201ENST00000498792 1227 ntBASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLCF1Q9UBD9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 ARMC10P1-201ENST00000313754 855 ntBASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 RNF152P1-201ENST00000397754 604 ntBASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 AC022616.7-201ENST00000525383 220 ntBASIC16.9■□□□□ 0.3
CLCF1Q9UBD9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms