Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCAL1Q9NZC9 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 KRT8P8-201ENST00000434750 1448 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 AP000997.3-201ENST00000623333 2250 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 MIPEPP3-201ENST00000412105 444 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 AL390719.1-204ENST00000412397 1219 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 TSPY6P-201ENST00000448518 926 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 FEM1AP3-201ENST00000403722 1741 ntBASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.04■□□□□ 0.8
SMARCAL1Q9NZC9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 AC126763.1-201ENST00000552015 2118 ntBASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 GUSBP6-202ENST00000438529 1198 ntBASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMARCAL1Q9NZC9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 AC073210.2-201ENST00000430369 194 ntBASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 AL109923.1-201ENST00000618799 583 ntBASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCAL1Q9NZC9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
SMARCAL1Q9NZC9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCAL1Q9NZC9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.02■□□□□ 0.79
SMARCAL1Q9NZC9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCAL1Q9NZC9 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms