Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 AC092368.3-202ENST00000574180 1591 ntBASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 MIR663A-201ENST00000385250 93 ntBASIC18.81■□□□□ 0.6
MKS1Q9NXB0 CDCA4P2-201ENST00000441182 718 ntBASIC18.81■□□□□ 0.6
MKS1Q9NXB0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 AC120498.8-201ENST00000614275 531 ntBASIC18.81■□□□□ 0.6
MKS1Q9NXB0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
MKS1Q9NXB0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 AC022517.1-201ENST00000592429 346 ntBASIC18.8■□□□□ 0.6
MKS1Q9NXB0 ANKRD20A6P-201ENST00000618763 204 ntBASIC18.8■□□□□ 0.6
MKS1Q9NXB0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MKS1Q9NXB0 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AP000997.3-201ENST00000623333 2250 ntBASIC18.79■□□□□ 0.6
MKS1Q9NXB0 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AC060766.5-201ENST00000590539 871 ntBASIC18.79■□□□□ 0.6
MKS1Q9NXB0 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 MYC-209ENST00000641252 345 ntBASIC18.79■□□□□ 0.6
MKS1Q9NXB0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MKS1Q9NXB0 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 AC008764.6-201ENST00000595909 2069 ntBASIC18.78■□□□□ 0.6
MKS1Q9NXB0 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 PNMA6B-201ENST00000538162 1200 ntBASIC18.78■□□□□ 0.6
MKS1Q9NXB0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.78■□□□□ 0.6
MKS1Q9NXB0 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms