Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 TUBB8P6-201ENST00000436895 1288 ntBASIC18.9■□□□□ 0.62
SSU72Q9NP77 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.9■□□□□ 0.62
SSU72Q9NP77 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSU72Q9NP77 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSU72Q9NP77 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.89■□□□□ 0.62
SSU72Q9NP77 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.89■□□□□ 0.61
SSU72Q9NP77 KRT18P5-201ENST00000436075 1291 ntBASIC18.89■□□□□ 0.61
SSU72Q9NP77 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 ESPNP-201ENST00000270691 2015 ntBASIC18.89■□□□□ 0.61
SSU72Q9NP77 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSU72Q9NP77 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.89■□□□□ 0.61
SSU72Q9NP77 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.88■□□□□ 0.61
SSU72Q9NP77 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 SLC25A6P5-201ENST00000435663 894 ntBASIC18.88■□□□□ 0.61
SSU72Q9NP77 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 MIR6821-201ENST00000617625 74 ntBASIC18.88■□□□□ 0.61
SSU72Q9NP77 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 HEIH-201ENST00000623091 1652 ntBASIC18.88■□□□□ 0.61
SSU72Q9NP77 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSU72Q9NP77 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.88■□□□□ 0.61
SSU72Q9NP77 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSU72Q9NP77 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSU72Q9NP77 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSU72Q9NP77 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSU72Q9NP77 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.87■□□□□ 0.61
SSU72Q9NP77 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.87■□□□□ 0.61
SSU72Q9NP77 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SSU72Q9NP77 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.87■□□□□ 0.61
SSU72Q9NP77 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SSU72Q9NP77 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SSU72Q9NP77 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms