Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AL359075.1-203ENST00000462729 1002 ntBASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TM9SF3Q9HD45 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 PCED1CP-201ENST00000419887 785 ntBASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 FAM86EP-206ENST00000510506 987 ntBASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.02■□□□□ 0.64
TM9SF3Q9HD45 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 AC009237.14-201ENST00000609975 1594 ntBASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.63
TM9SF3Q9HD45 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 AL691432.2-201ENST00000607222 2038 ntBASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 KRT8P45-201ENST00000414328 1447 ntBASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 AL671277.2-201ENST00000458060 996 ntBASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.01■□□□□ 0.63
TM9SF3Q9HD45 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 KRT8P11-201ENST00000409686 1436 ntBASIC19■□□□□ 0.63
TM9SF3Q9HD45 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 AC009947.2-201ENST00000444014 672 ntBASIC19■□□□□ 0.63
TM9SF3Q9HD45 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TM9SF3Q9HD45 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TM9SF3Q9HD45 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TM9SF3Q9HD45 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms