Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AL671277.2-201ENST00000458060 996 ntBASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AL691432.3-201ENST00000621860 400 ntBASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 AL023973.1-201ENST00000624619 620 ntBASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.11■□□□□ 0.65
HDDC3Q8N4P3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 DUSP5P1-201ENST00000441325 1139 ntBASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
HDDC3Q8N4P3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HDDC3Q8N4P3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.08■□□□□ 0.65
HDDC3Q8N4P3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 AL359075.1-203ENST00000462729 1002 ntBASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.08■□□□□ 0.64
HDDC3Q8N4P3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms