Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 AC113410.3-201ENST00000623366 203 ntBASIC16.84■□□□□ 0.29
SKA3Q8IX90 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 KRT8P41-201ENST00000533985 1514 ntBASIC16.84■□□□□ 0.29
SKA3Q8IX90 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SKA3Q8IX90 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.84■□□□□ 0.29
SKA3Q8IX90 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SKA3Q8IX90 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
SKA3Q8IX90 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SKA3Q8IX90 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
SKA3Q8IX90 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 MIR718-201ENST00000390190 70 ntBASIC16.83■□□□□ 0.28
SKA3Q8IX90 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.83■□□□□ 0.28
SKA3Q8IX90 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SKA3Q8IX90 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 PTGES2-AS1-201ENST00000443493 2100 ntBASIC16.82■□□□□ 0.28
SKA3Q8IX90 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 AC141586.3-201ENST00000562166 1838 ntBASIC16.82■□□□□ 0.28
SKA3Q8IX90 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.82■□□□□ 0.28
SKA3Q8IX90 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SKA3Q8IX90 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 TNXA-203ENST00000507684 2038 ntBASIC16.81■□□□□ 0.28
SKA3Q8IX90 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 AC020916.1-201ENST00000587762 1774 ntBASIC16.81■□□□□ 0.28
SKA3Q8IX90 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.81■□□□□ 0.28
SKA3Q8IX90 RCC2P6-201ENST00000526625 1557 ntBASIC16.81■□□□□ 0.28
SKA3Q8IX90 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SKA3Q8IX90 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms