Protein–RNA interactions for Protein: P61247

RPS3A, 40S ribosomal protein S3a, humanhuman

Known RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3AP61247 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.81■□□□□ 0.44
RPS3AP61247 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RPS3AP61247 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.81■□□□□ 0.44
RPS3AP61247 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
RPS3AP61247 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.81■□□□□ 0.44
RPS3AP61247 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.81■□□□□ 0.44
RPS3AP61247 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.81■□□□□ 0.44
RPS3AP61247 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
RPS3AP61247 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.81■□□□□ 0.44
RPS3AP61247 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.81■□□□□ 0.44
RPS3AP61247 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPS3AP61247 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.8■□□□□ 0.44
RPS3AP61247 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 KRASP1-201ENST00000407852 552 ntBASIC17.8■□□□□ 0.44
RPS3AP61247 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.8■□□□□ 0.44
RPS3AP61247 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.8■□□□□ 0.44
RPS3AP61247 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 AC110285.5-201ENST00000611501 352 ntBASIC17.8■□□□□ 0.44
RPS3AP61247 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
RPS3AP61247 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
RPS3AP61247 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
RPS3AP61247 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.8■□□□□ 0.44
RPS3AP61247 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
RPS3AP61247 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.79■□□□□ 0.44
RPS3AP61247 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.79■□□□□ 0.44
RPS3AP61247 AC133681.1-201ENST00000465482 601 ntBASIC17.79■□□□□ 0.44
RPS3AP61247 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.79■□□□□ 0.44
RPS3AP61247 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
RPS3AP61247 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.79■□□□□ 0.44
RPS3AP61247 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.79■□□□□ 0.44
RPS3AP61247 AC139713.2-201ENST00000641328 2723 ntBASIC17.79■□□□□ 0.44
RPS3AP61247 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.79■□□□□ 0.44
RPS3AP61247 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RPS3AP61247 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms