Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.46■□□□□ 0.54
FOXA1P55317 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
FOXA1P55317 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
FOXA1P55317 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.45■□□□□ 0.54
FOXA1P55317 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.45■□□□□ 0.54
FOXA1P55317 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.45■□□□□ 0.54
FOXA1P55317 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 AL160286.2-201ENST00000567150 934 ntBASIC18.45■□□□□ 0.54
FOXA1P55317 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.45■□□□□ 0.54
FOXA1P55317 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.45■□□□□ 0.54
FOXA1P55317 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
FOXA1P55317 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.45■□□□□ 0.54
FOXA1P55317 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.45■□□□□ 0.54
FOXA1P55317 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.45■□□□□ 0.54
FOXA1P55317 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.44■□□□□ 0.54
FOXA1P55317 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.44■□□□□ 0.54
FOXA1P55317 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
FOXA1P55317 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.44■□□□□ 0.54
FOXA1P55317 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.44■□□□□ 0.54
FOXA1P55317 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.44■□□□□ 0.54
FOXA1P55317 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.44■□□□□ 0.54
FOXA1P55317 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.44■□□□□ 0.54
FOXA1P55317 AC083906.6-201ENST00000641366 219 ntBASIC18.44■□□□□ 0.54
FOXA1P55317 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
FOXA1P55317 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.43■□□□□ 0.54
FOXA1P55317 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA1P55317 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA1P55317 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.43■□□□□ 0.54
FOXA1P55317 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 MTDHP1-201ENST00000605323 784 ntBASIC18.43■□□□□ 0.54
FOXA1P55317 AC069544.1-201ENST00000609399 999 ntBASIC18.43■□□□□ 0.54
FOXA1P55317 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
FOXA1P55317 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
FOXA1P55317 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
FOXA1P55317 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 AL390961.4-201ENST00000623958 2535 ntBASIC18.42■□□□□ 0.54
FOXA1P55317 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.42■□□□□ 0.54
FOXA1P55317 TSPY21P-201ENST00000433481 731 ntBASIC18.42■□□□□ 0.54
FOXA1P55317 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.42■□□□□ 0.54
FOXA1P55317 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 AP003097.1-201ENST00000530657 1135 ntBASIC18.42■□□□□ 0.54
FOXA1P55317 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.42■□□□□ 0.54
FOXA1P55317 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
FOXA1P55317 AC018470.1-201ENST00000624790 3129 ntBASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms