Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC27.28■■□□□ 1.96
CLTCL1P53675 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC27.28■■□□□ 1.96
CLTCL1P53675 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
CLTCL1P53675 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
CLTCL1P53675 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CLTCL1P53675 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CLTCL1P53675 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC27.28■■□□□ 1.96
CLTCL1P53675 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CLTCL1P53675 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC27.27■■□□□ 1.96
CLTCL1P53675 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC27.27■■□□□ 1.96
CLTCL1P53675 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC27.27■■□□□ 1.96
CLTCL1P53675 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC27.27■■□□□ 1.96
CLTCL1P53675 RCC2P3-201ENST00000418112 1537 ntBASIC27.27■■□□□ 1.96
CLTCL1P53675 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 AP002383.4-201ENST00000442518 975 ntBASIC27.27■■□□□ 1.96
CLTCL1P53675 MIR3917-201ENST00000580971 93 ntBASIC27.27■■□□□ 1.96
CLTCL1P53675 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CLTCL1P53675 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
CLTCL1P53675 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.96
CLTCL1P53675 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
CLTCL1P53675 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
CLTCL1P53675 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
CLTCL1P53675 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC27.26■■□□□ 1.95
CLTCL1P53675 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
CLTCL1P53675 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
CLTCL1P53675 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
CLTCL1P53675 AL162741.1-201ENST00000565563 1558 ntBASIC27.25■■□□□ 1.95
CLTCL1P53675 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CLTCL1P53675 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
CLTCL1P53675 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CLTCL1P53675 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC27.25■■□□□ 1.95
CLTCL1P53675 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CLTCL1P53675 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC27.25■■□□□ 1.95
CLTCL1P53675 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC27.24■■□□□ 1.95
CLTCL1P53675 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC27.24■■□□□ 1.95
CLTCL1P53675 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC27.24■■□□□ 1.95
CLTCL1P53675 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC27.24■■□□□ 1.95
CLTCL1P53675 ELP6-205ENST00000439305 880 ntTSL 2 BASIC27.24■■□□□ 1.95
CLTCL1P53675 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC27.24■■□□□ 1.95
CLTCL1P53675 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC27.24■■□□□ 1.95
CLTCL1P53675 AL136038.4-201ENST00000603606 1261 ntBASIC27.24■■□□□ 1.95
CLTCL1P53675 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
CLTCL1P53675 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CLTCL1P53675 EFS-203ENST00000429593 2610 ntTSL 2 BASIC27.24■■□□□ 1.95
CLTCL1P53675 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC27.24■■□□□ 1.95
CLTCL1P53675 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
CLTCL1P53675 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CLTCL1P53675 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC27.24■■□□□ 1.95
CLTCL1P53675 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
CLTCL1P53675 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC27.23■■□□□ 1.95
CLTCL1P53675 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC27.23■■□□□ 1.95
CLTCL1P53675 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC27.23■■□□□ 1.95
CLTCL1P53675 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC27.23■■□□□ 1.95
CLTCL1P53675 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC27.23■■□□□ 1.95
CLTCL1P53675 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CLTCL1P53675 AC016734.2-201ENST00000624325 1377 ntBASIC27.23■■□□□ 1.95
CLTCL1P53675 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CLTCL1P53675 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
CLTCL1P53675 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC27.22■■□□□ 1.95
CLTCL1P53675 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CLTCL1P53675 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC27.22■■□□□ 1.95
CLTCL1P53675 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CLTCL1P53675 PRR29-207ENST00000580752 458 ntTSL 3 BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms