Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.91■□□□□ 0.46
SOX3P41225 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SOX3P41225 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SOX3P41225 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.9■□□□□ 0.46
SOX3P41225 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.9■□□□□ 0.46
SOX3P41225 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.9■□□□□ 0.46
SOX3P41225 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 AC073912.3-201ENST00000624414 853 ntBASIC17.9■□□□□ 0.46
SOX3P41225 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SOX3P41225 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SOX3P41225 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SOX3P41225 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SOX3P41225 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SOX3P41225 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
SOX3P41225 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SOX3P41225 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.89■□□□□ 0.45
SOX3P41225 AC004980.1-204ENST00000429707 299 ntBASIC17.89■□□□□ 0.45
SOX3P41225 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.89■□□□□ 0.45
SOX3P41225 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.89■□□□□ 0.45
SOX3P41225 AC131212.4-201ENST00000623606 975 ntBASIC17.89■□□□□ 0.45
SOX3P41225 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.89■□□□□ 0.45
SOX3P41225 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SOX3P41225 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SOX3P41225 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.89■□□□□ 0.45
SOX3P41225 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.89■□□□□ 0.45
SOX3P41225 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.88■□□□□ 0.45
SOX3P41225 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
SOX3P41225 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX3P41225 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.88■□□□□ 0.45
SOX3P41225 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SOX3P41225 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.88■□□□□ 0.45
SOX3P41225 AC116562.2-201ENST00000507042 360 ntBASIC17.88■□□□□ 0.45
SOX3P41225 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.88■□□□□ 0.45
SOX3P41225 AC026271.3-201ENST00000571884 352 ntBASIC17.88■□□□□ 0.45
SOX3P41225 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 AC007613.1-201ENST00000572811 2597 ntBASIC17.88■□□□□ 0.45
SOX3P41225 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SOX3P41225 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.88■□□□□ 0.45
SOX3P41225 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.88■□□□□ 0.45
SOX3P41225 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SOX3P41225 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms