Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
MSX2P35548 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
MSX2P35548 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
MSX2P35548 AC126763.1-201ENST00000552015 2118 ntBASIC18.17■□□□□ 0.5
MSX2P35548 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.17■□□□□ 0.5
MSX2P35548 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
MSX2P35548 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.17■□□□□ 0.5
MSX2P35548 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.17■□□□□ 0.5
MSX2P35548 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 HCG11-201ENST00000411553 5696 ntBASIC18.17■□□□□ 0.5
MSX2P35548 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 AC020916.1-201ENST00000587762 1774 ntBASIC18.17■□□□□ 0.5
MSX2P35548 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.17■□□□□ 0.5
MSX2P35548 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MSX2P35548 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
MSX2P35548 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.16■□□□□ 0.5
MSX2P35548 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
MSX2P35548 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX2P35548 MIR935-201ENST00000401179 91 ntBASIC18.16■□□□□ 0.5
MSX2P35548 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.16■□□□□ 0.5
MSX2P35548 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.16■□□□□ 0.5
MSX2P35548 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX2P35548 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MSX2P35548 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.16■□□□□ 0.5
MSX2P35548 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX2P35548 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.16■□□□□ 0.5
MSX2P35548 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MSX2P35548 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
MSX2P35548 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 KRT17P1-201ENST00000399211 1546 ntBASIC18.15■□□□□ 0.5
MSX2P35548 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MSX2P35548 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.15■□□□□ 0.5
MSX2P35548 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.15■□□□□ 0.5
MSX2P35548 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
MSX2P35548 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.15■□□□□ 0.5
MSX2P35548 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.15■□□□□ 0.5
MSX2P35548 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MSX2P35548 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.15■□□□□ 0.5
MSX2P35548 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MSX2P35548 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MSX2P35548 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
MSX2P35548 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.14■□□□□ 0.49
MSX2P35548 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.14■□□□□ 0.49
MSX2P35548 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MSX2P35548 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms